Groups > linux.debian.maint.python > #11359

Re: python-scipy: autopkgtest fails (Re: bug#919929)

From	Paul Gevers <elbrus@debian.org>
Newsgroups	linux.debian.maint.python, linux.debian.devel.release, linux.debian.bugs.dist
Subject	Re: python-scipy: autopkgtest fails (Re: bug#919929)
Date	2019-03-09 21:00 +0100
Message-ID	<xzQit-M1-5@gated-at.bofh.it> (permalink)
References	(1 earlier) <xyWgh-7Dy-1@gated-at.bofh.it> <xyZ4t-XP-1@gated-at.bofh.it> <xz0ad-1Bh-1@gated-at.bofh.it> <xz0Dg-1LB-5@gated-at.bofh.it> <xzd7r-1sE-1@gated-at.bofh.it>
Organization	linux.* mail to news gateway

Cross-posted to 3 groups.

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Hi Drew,

On 08-03-2019 03:08, Drew Parsons wrote:
> On 2019-03-07 20:46, Paul Gevers wrote:
>> If you upload now, your package will not migrate to testing before the
>> full freeze becomes effective so it would need an unblock. If you want
>> to fix this issue with the three lines I saw in the bug report, you can
>> go ahead. However, it is probably worth waiting for a resolution of bug
>> 915738 and combine it with that.
>>
> 
> Alas, the deprecation patch (in python-scipy 1.1.0-3) doesn't actually
> prevent emission of the deprecation warnings, so they're still spamming
> the debci log.

Do you have evidence they did anything at all? If not, please revert
this if we get to a new upload.

> On the bright side, s390x is now using gfortran-8
> successfully (#915738).

Well, at least some success then.

> To remove the deprecation warnings we'd need to deal with them at the
> source. Upstream has patches
> https://github.com/scipy/scipy/commit/614847c5fc8d5f8a618980df3c1b93540428ae46
> 
> https://github.com/scipy/scipy/commit/e0cfa29e2fbe86f994924c0c7514ff5bbfffd514
> 
> and for completeness
> https://github.com/scipy/scipy/commit/87e48c3c54d7a85bc6628c88c1de98ac0469b6fa
> 
> 
> The deprecation problem (matrix API) appears in many places, but the fix
> is straightfoward: replace np.matrix with matrix from from
> scipy.sparse.sputils
> 
> Can you authorise an unblock to apply these 3 upstream patches to
> python-scipy 1.1.0 ?
> That won't necessarily fix the debci failure, but it will make it a lot
> easier to see what's actually failing.

I am slightly unhappy with the second patch, as it seems to be doing
more than you describe above in a few places. This may be correct but
that is difficult to quickly judge.

Also, what is the general documented way that these wrappers can be
used? scipy is sort of taking over the maintenanceship of these
functions in this way if we're not careful.

Paul

Thread

python-scipy: autopkgtest fails (Re:bug#919929) Drew Parsons <dparsons@debian.org> - 2019-03-05 12:10 +0100
  Re: python-scipy: autopkgtest fails (Re: bug#919929) Andreas Tille <tille@debian.org> - 2019-03-07 09:10 +0100
    Re: python-scipy: autopkgtest fails (Re: bug#919929) Paul Gevers <elbrus@debian.org> - 2019-03-07 12:10 +0100
      Re: python-scipy: autopkgtest fails (Re: bug#919929) Drew Parsons <dparsons@debian.org> - 2019-03-07 13:20 +0100
        Re: python-scipy: autopkgtest fails (Re: bug#919929) Paul Gevers <elbrus@debian.org> - 2019-03-07 13:50 +0100
          Re: python-scipy: autopkgtest fails (Re: bug#919929) Drew Parsons <dparsons@debian.org> - 2019-03-07 15:00 +0100
            Re: python-scipy: autopkgtest fails (Re: bug#919929) Paul Gevers <elbrus@debian.org> - 2019-03-07 15:10 +0100
              Re: python-scipy: autopkgtest fails (Re: bug#919929) Drew Parsons <dparsons@debian.org> - 2019-03-07 15:30 +0100
          Re: python-scipy: autopkgtest fails (Re: bug#919929) Drew Parsons <dparsons@debian.org> - 2019-03-08 03:10 +0100
            Re: python-scipy: autopkgtest fails (Re: bug#919929) Paul Gevers <elbrus@debian.org> - 2019-03-09 21:00 +0100
              Re: python-scipy: autopkgtest fails (Re: bug#919929) Drew Parsons <dparsons@debian.org> - 2019-03-10 08:50 +0100
                Re: python-scipy: autopkgtest fails (Re: bug#919929) Drew Parsons <dparsons@debian.org> - 2019-03-11 07:50 +0100
                unblock request: python-scipy/1.1.0-4 skimage/0.14.2-2: autopkgtest  passes (Re: bug#919929) Drew Parsons <dparsons@debian.org> - 2019-03-16 13:50 +0100
                Re: unblock request: python-scipy/1.1.0-4 skimage/0.14.2-2:  autopkgtest passes (Re: bug#919929) Paul Gevers <elbrus@debian.org> - 2019-03-16 15:10 +0100
                Re: unblock request: python-scipy/1.1.0-4 skimage/0.14.2-2:  autopkgtest passes (Re: bug#919929) Drew Parsons <dparsons@debian.org> - 2019-03-16 17:00 +0100

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