Path: csiph.com!aioe.org!bofh.it!news.nic.it!robomod From: Paul Gevers Newsgroups: linux.debian.maint.python,linux.debian.devel.release,linux.debian.bugs.dist Subject: Re: python-scipy: autopkgtest fails (Re: bug#919929) Date: Sat, 09 Mar 2019 21:00:02 +0100 Message-ID: References: X-Mailbox-Line: From debian-python-request@lists.debian.org Sat Mar 9 19:51:43 2019 Old-Return-Path: X-Amavis-Spam-Status: No, score=-14.28 tagged_above=-10000 required=5.3 tests=[BAYES_00=-2, DIGITS_LETTERS=1, LDO_WHITELIST=-5, MD5_SHA1_SUM=-1, MURPHY_DRUGS_REL8=0.02, PGPSIGNATURE=-5, RCVD_IN_DNSWL_MED=-2.3] autolearn=ham autolearn_force=no Openpgp: preference=signencrypt Autocrypt: addr=elbrus@debian.org; prefer-encrypt=mutual; keydata= mQENBE2LmVYBCADS6vA01KutEM74dDGrsmT2q6Mh5C3TAyNhLigBEWNGnfbFr6AHX1EvdkC/ 7g5QcFGqiiOjTdHncRNtvUbistfbF1ynE6evD3p5tpkn6ymmVwSIjx9np7GWJgZgBo0zkpij M1iimHTs1BcZhL7WQlvVJO3Xm8jr7NpgjkRRkkPaj0Kd/HYuPGqN74pwXB7nR5Uw2ypYS0eT iCHUUTUrvgP3fqOWc2bgbCIsuoXpp/QLT5ehC+M01UKMHVUkr97cwT4wg03XqE2cL7r6szry GZMpL3CU4IsPNghfeZhRrZlk6A73OtpLxTXibydt8Og91eC2ALer28bJnn+haIaTNwc3ABEB AAG0H1BhdWwgR2V2ZXJzIDxlbGJydXNAZGViaWFuLm9yZz6JAVcEEwEIAEECGyMFCwkIBwMF FQoJCAsFFgIDAQACHgECF4ACGQEWIQRYtm1Ic2vpOwUt5nKcXJnrBb11CgUCXHRFuQUJEqsT YwAKCRCcXJnrBb11CgycB/9Kl9K85cXLGo5PJ0a4oiq53kOTuzlmFPRedMhwECQ+JrFigLe2 DH1ZhLpepzQ5Bszq5vMbiqK6Ek5yKH6NYp7ktPYQaFsqNybPaaNkkj/i1pGlnpYESuliiLQG Scj9+oGd8mD4cF1VWboLuAESW2lr2bJs3ln/7bt9CNhgKZ5h6zMJ+0ZaSjbjpv3eKu6WTquT c+/p5sU4m0WE/FSkg28SvWEcyqTuVvs63CT/CK9xeAmUaMKf18qrKX1AURyn6nf+Aqs11ATD EeTmGW08VvKSlVVrR0HLSyTOOQxEV99upobhOm2Ml4an9RrSJS1LUiEYR5QMvvDR3VJ+W6KQ GW/OuQENBE2LmVYBCAC6ZRwRIuJ2l2FYLd5/URSgkTSfwANnXWBpNOVYhuGrvveA0e9KrToI pqZCRjrAiuaW4aaQq8dwYZpCMJhq3VzVW0C0BA7QARrePEQfJXkNiHyYEoJrmt21zQO8KP1m d13TtX1jj/Sqt2Y4efbKKZ2VeWwngsgXOwCTVyj7tth6fwn+5bPptxp/Ux4CXD5G4XvGTGfR pEa61sfvh6NEZTbe/7gGFEOBSat7esVAj170NVc4V8HX+/NtlJrlEce6BMbCvug5vF4iGkMY NwbdzFu2+rB+w9Dmo262lnWtUYQpX1nnmbWS8nU7ygCcKd/xc08xYCu1gt69YHp7yOqK2Nr3 ABEBAAGJATwEGAEIACYCGwwWIQRYtm1Ic2vpOwUt5nKcXJnrBb11CgUCXHRFvwUJEqsTaQAK CRCcXJnrBb11ChElB/wJvGm3rOIuUpd1TQaCT1TGr2YHCF23+WnLfndjaBLgCaAyChfv20b1 cslCZvswy6UwTX9AvksiIZhfWE5GHXTxk1Z02bwqTWagtPTr5HBIdSGf9m1abrqknl0B50Kr wWLe9U80ch2atix0qq1nW/R9/2O3/wledNk45bEb8JzxBctMnPYMzIf53zy0hEoCLf3hm6AS vUmMd0+OFk3kUwb9S/k8jjdIw1PBi/ukexqipuUzLX9YYDlNsDLp5M9vgDQDJWfrCFbSkr4G /EEo4yh4uhWIU5rSrvrtKEQZYtXrm5x996qn79m/9CPZJarUK4PHnaN0iE+D168Yblay+e6R User-Agent: Mozilla/5.0 (X11; Linux x86_64; rv:60.0) Gecko/20100101 Thunderbird/60.5.1 MIME-Version: 1.0 Content-Type: multipart/signed; micalg=pgp-sha256; protocol="application/pgp-signature"; boundary="KGoQstSNJqdQ9xvKepLI2OU33FVbBTdBP" X-Mailing-List: archive/latest/16819 List-ID: List-URL: List-Archive: https://lists.debian.org/msgid-search/72d2e7a8-3661-6ba1-cd65-df81a3bf07d6@debian.org Approved: robomod@news.nic.it Lines: 107 Organization: linux.* mail to news gateway Sender: robomod@news.nic.it X-Original-Cc: Andreas Tille , debian-python@lists.debian.org, jtaylor.debian@googlemail.com, debian-release@lists.debian.org, 919929@bugs.debian.org X-Original-Date: Sat, 9 Mar 2019 20:51:22 +0100 X-Original-Message-ID: <72d2e7a8-3661-6ba1-cd65-df81a3bf07d6@debian.org> X-Original-References: <3e555bf95e5228d291a7fe94beaa4ada@emerall.com> <20190307080302.zc6q5ljr6vyd2yqf@an3as.eu> <61c0d630-7a1a-aa31-d6c6-062b3747b735@debian.org> <387d0b8f-0cf2-2edf-62fe-8ee63c86dcd3@debian.org> Xref: csiph.com linux.debian.maint.python:11359 linux.debian.devel.release:85040 linux.debian.bugs.dist:949064 This is an OpenPGP/MIME signed message (RFC 4880 and 3156) --KGoQstSNJqdQ9xvKepLI2OU33FVbBTdBP Content-Type: multipart/mixed; boundary="aac8CEISufn5yneZH03SSXSZkubkE1Egi"; protected-headers="v1" From: Paul Gevers To: dparsons@debian.org Cc: Andreas Tille , debian-python@lists.debian.org, jtaylor.debian@googlemail.com, debian-release@lists.debian.org, 919929@bugs.debian.org Message-ID: <72d2e7a8-3661-6ba1-cd65-df81a3bf07d6@debian.org> Subject: Re: python-scipy: autopkgtest fails (Re: bug#919929) References: <3e555bf95e5228d291a7fe94beaa4ada@emerall.com> <20190307080302.zc6q5ljr6vyd2yqf@an3as.eu> <61c0d630-7a1a-aa31-d6c6-062b3747b735@debian.org> <387d0b8f-0cf2-2edf-62fe-8ee63c86dcd3@debian.org> In-Reply-To: --aac8CEISufn5yneZH03SSXSZkubkE1Egi Content-Type: text/plain; charset=utf-8 Content-Language: en-US Content-Transfer-Encoding: quoted-printable Hi Drew, On 08-03-2019 03:08, Drew Parsons wrote: > On 2019-03-07 20:46, Paul Gevers wrote: >> If you upload now, your package will not migrate to testing before the= >> full freeze becomes effective so it would need an unblock. If you want= >> to fix this issue with the three lines I saw in the bug report, you ca= n >> go ahead. However, it is probably worth waiting for a resolution of bu= g >> 915738 and combine it with that. >> >=20 > Alas, the deprecation patch (in python-scipy 1.1.0-3) doesn't actually > prevent emission of the deprecation warnings, so they're still spamming= > the debci log. Do you have evidence they did anything at all? If not, please revert this if we get to a new upload. > On the bright side, s390x is now using gfortran-8 > successfully (#915738). Well, at least some success then. > To remove the deprecation warnings we'd need to deal with them at the > source. Upstream has patches > https://github.com/scipy/scipy/commit/614847c5fc8d5f8a618980df3c1b93540= 428ae46 >=20 > https://github.com/scipy/scipy/commit/e0cfa29e2fbe86f994924c0c7514ff5bb= fffd514 >=20 > and for completeness > https://github.com/scipy/scipy/commit/87e48c3c54d7a85bc6628c88c1de98ac0= 469b6fa >=20 >=20 > The deprecation problem (matrix API) appears in many places, but the fi= x > is straightfoward: replace np.matrix with matrix from from > scipy.sparse.sputils >=20 > Can you authorise an unblock to apply these 3 upstream patches to > python-scipy 1.1.0 ? > That won't necessarily fix the debci failure, but it will make it a lot= > easier to see what's actually failing. I am slightly unhappy with the second patch, as it seems to be doing more than you describe above in a few places. This may be correct but that is difficult to quickly judge. Also, what is the general documented way that these wrappers can be used? scipy is sort of taking over the maintenanceship of these functions in this way if we're not careful. Paul --aac8CEISufn5yneZH03SSXSZkubkE1Egi-- --KGoQstSNJqdQ9xvKepLI2OU33FVbBTdBP Content-Type: application/pgp-signature; name="signature.asc" Content-Description: OpenPGP digital signature Content-Disposition: attachment; filename="signature.asc" -----BEGIN PGP SIGNATURE----- iQEzBAEBCAAdFiEEWLZtSHNr6TsFLeZynFyZ6wW9dQoFAlyEGToACgkQnFyZ6wW9 dQrUjQf/Ukiy/ez+F9DLeZnYYgJAi+cdQJbbhIFZTrJJXYfLy4uKiH5x2aWy19Ho WUoWSay509fgFLNa7MwZQvRl3aZQKL6R6BNbl623qZA6OyTU/mt104iiwlCE9XMf +SFm5z6foFm3e/MXQ1hzv1QoMOYiYlOFGs+cExPYUGJv2TYOnms/E6koBBztMm7r VHk0ywjWt+64kdbkab5Di6mz42/2JHRcjg1jVYLi5ZrC0WKRmX+CXr4bvBh2KN3t 7o7NmbQfdTbBzEybroJxZ86h2LtZNspkgZx65pyLkQVqQfNEEurfnqhLlzHmCLhc PXYCJXg63zOHTCry4w74dnvQguyS/g== =asOi -----END PGP SIGNATURE----- --KGoQstSNJqdQ9xvKepLI2OU33FVbBTdBP--