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Groups > linux.debian.maint.python > #11357

Re: python-scipy: autopkgtest fails (Re: bug#919929)

From Drew Parsons <dparsons@debian.org>
Newsgroups linux.debian.maint.python, linux.debian.devel.release, linux.debian.bugs.dist
Subject Re: python-scipy: autopkgtest fails (Re: bug#919929)
Date 2019-03-08 03:10 +0100
Message-ID <xzd7r-1sE-1@gated-at.bofh.it> (permalink)
References <xyg7o-6lM-3@gated-at.bofh.it> <xyWgh-7Dy-1@gated-at.bofh.it> <xyZ4t-XP-1@gated-at.bofh.it> <xz0ad-1Bh-1@gated-at.bofh.it> <xz0Dg-1LB-5@gated-at.bofh.it>
Organization The Debian Project

Cross-posted to 3 groups.

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On 2019-03-07 20:46, Paul Gevers wrote:
> 
> If you upload now, your package will not migrate to testing before the
> full freeze becomes effective so it would need an unblock. If you want
> to fix this issue with the three lines I saw in the bug report, you can
> go ahead. However, it is probably worth waiting for a resolution of bug
> 915738 and combine it with that.
> 

Alas, the deprecation patch (in python-scipy 1.1.0-3) doesn't actually 
prevent emission of the deprecation warnings, so they're still spamming 
the debci log.  On the bright side, s390x is now using gfortran-8 
successfully (#915738).

To remove the deprecation warnings we'd need to deal with them at the 
source. Upstream has patches
https://github.com/scipy/scipy/commit/614847c5fc8d5f8a618980df3c1b93540428ae46
https://github.com/scipy/scipy/commit/e0cfa29e2fbe86f994924c0c7514ff5bbfffd514
and for completeness
https://github.com/scipy/scipy/commit/87e48c3c54d7a85bc6628c88c1de98ac0469b6fa

The deprecation problem (matrix API) appears in many places, but the fix 
is straightfoward: replace np.matrix with matrix from from 
scipy.sparse.sputils

Can you authorise an unblock to apply these 3 upstream patches to 
python-scipy 1.1.0 ?
That won't necessarily fix the debci failure, but it will make it a lot 
easier to see what's actually failing.

Drew

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Thread

python-scipy: autopkgtest fails (Re:bug#919929) Drew Parsons <dparsons@debian.org> - 2019-03-05 12:10 +0100
  Re: python-scipy: autopkgtest fails (Re: bug#919929) Andreas Tille <tille@debian.org> - 2019-03-07 09:10 +0100
    Re: python-scipy: autopkgtest fails (Re: bug#919929) Paul Gevers <elbrus@debian.org> - 2019-03-07 12:10 +0100
      Re: python-scipy: autopkgtest fails (Re: bug#919929) Drew Parsons <dparsons@debian.org> - 2019-03-07 13:20 +0100
        Re: python-scipy: autopkgtest fails (Re: bug#919929) Paul Gevers <elbrus@debian.org> - 2019-03-07 13:50 +0100
          Re: python-scipy: autopkgtest fails (Re: bug#919929) Drew Parsons <dparsons@debian.org> - 2019-03-07 15:00 +0100
            Re: python-scipy: autopkgtest fails (Re: bug#919929) Paul Gevers <elbrus@debian.org> - 2019-03-07 15:10 +0100
              Re: python-scipy: autopkgtest fails (Re: bug#919929) Drew Parsons <dparsons@debian.org> - 2019-03-07 15:30 +0100
          Re: python-scipy: autopkgtest fails (Re: bug#919929) Drew Parsons <dparsons@debian.org> - 2019-03-08 03:10 +0100
            Re: python-scipy: autopkgtest fails (Re: bug#919929) Paul Gevers <elbrus@debian.org> - 2019-03-09 21:00 +0100
              Re: python-scipy: autopkgtest fails (Re: bug#919929) Drew Parsons <dparsons@debian.org> - 2019-03-10 08:50 +0100
                Re: python-scipy: autopkgtest fails (Re: bug#919929) Drew Parsons <dparsons@debian.org> - 2019-03-11 07:50 +0100
                unblock request: python-scipy/1.1.0-4 skimage/0.14.2-2: autopkgtest  passes (Re: bug#919929) Drew Parsons <dparsons@debian.org> - 2019-03-16 13:50 +0100
                Re: unblock request: python-scipy/1.1.0-4 skimage/0.14.2-2:  autopkgtest passes (Re: bug#919929) Paul Gevers <elbrus@debian.org> - 2019-03-16 15:10 +0100
                Re: unblock request: python-scipy/1.1.0-4 skimage/0.14.2-2:  autopkgtest passes (Re: bug#919929) Drew Parsons <dparsons@debian.org> - 2019-03-16 17:00 +0100

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