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Groups > linux.debian.maint.java > #8784

Re: Help needed for gatk

From Andreas Tille <andreas@an3as.eu>
Newsgroups linux.debian.maint.java
Subject Re: Help needed for gatk
Date 2016-01-29 22:40 +0100
Message-ID <qWoVR-MS-17@gated-at.bofh.it> (permalink)
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Hi Andrew,

On Fri, Jan 29, 2016 at 10:44:07AM -0800, Andrew Schurman wrote:
> 
> Based on the history of the repo, it appears to be the same project by
> the same author. I don't think it's too much of a stretch to use this
> new repo. If you want to be extra cautious, you could compare source of
> the sources.jar in maven central to one of the old tags in github to
> see if there are any significant changes.
> 
> In fact, I believe most debian projects use a slightly different
> version of plugins than what is called for in the project so that we
> can deploy a single version in debian. Sometimes this means security
> fixes. Other times, there is no benefit.

OK, I admit I have also a better feeling when using the latest version.
So I'll change the packaging to use this.
 
> >   Or may be I should write a d/watch
> > file containing
> > 
> > 
> >    https://github.com/davidB/scala-maven-plugin/releases?after=3.1.1 
> > .*/archive/v*(2\.[\d.-]+)\.(?:tar(?:\.gz|\.bz2)?|tgz)
> > 
> > 
> > which is a bit weak but fetches (at least at this point in time) the
> > latest version of scala-maven-plugin 2.x - which seems to be the old
> > version you were suggesting to use.
> 
> The purpose of the watch file is to check for new releases.

Sure.

> I believe
> github releases are ordered by date, so you'll have to remove the
> ?after=3.1.1. If the author happens create a hotfix 2.x branch and
> another release, you'll miss it since the new release would be before
> (date ordered) 3.1.1.

Yes, I tried to mention this very weak hack in a remark.  My assumption
was based on the hope that hotfixes on 2.x are not very probable.
 
> I don't have any better ideas for you. It sounds like a good approach
> to me. You could also send a patch upstream to upgrade to the latest
> scala-maven-plugin which means less smoke and mirrors in the future.

I'll just try with the latest scala-maven-plugin and will ask here
for help (as always if I might run into heavy problems.
 
Thanks for your comments

       Andreas.

-- 
http://fam-tille.de

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Thread

Help needed for gatk Andreas Tille <andreas@an3as.eu> - 2016-01-21 09:50 +0100
  Re: Help needed for gatk Thorsten Glaser <t.glaser@tarent.de> - 2016-01-21 10:00 +0100
    Re: Help needed for gatk Andreas Tille <andreas@an3as.eu> - 2016-01-21 10:10 +0100
      Re: Help needed for gatk gregor herrmann <gregoa@debian.org> - 2016-01-21 10:10 +0100
      Re: Help needed for gatk Thorsten Glaser <t.glaser@tarent.de> - 2016-01-21 10:20 +0100
        Re: Help needed for gatk Emmanuel Bourg <ebourg@apache.org> - 2016-01-21 10:30 +0100
          Re: Help needed for gatk Andreas Tille <andreas@an3as.eu> - 2016-01-21 10:50 +0100
            Re: Help needed for gatk Emmanuel Bourg <ebourg@apache.org> - 2016-01-21 11:10 +0100
              Re: Help needed for gatk Andreas Tille <andreas@an3as.eu> - 2016-01-27 15:10 +0100
                Re: Help needed for gatk Andrew Schurman <arcticwaters@gmail.com> - 2016-01-28 00:00 +0100
                Re: Help needed for gatk Andreas Tille <andreas@an3as.eu> - 2016-01-28 16:30 +0100
                Re: Help needed for gatk Andrew Schurman <arcticwaters@gmail.com> - 2016-01-29 19:50 +0100
                Re: Help needed for gatk Andreas Tille <andreas@an3as.eu> - 2016-01-29 22:40 +0100
                Packaging maven-scala-plugin (Was: Help needed for gatk) Andreas Tille <tille@debian.org> - 2016-01-28 19:40 +0100
                Re: Packaging maven-scala-plugin (Was: Help needed for gatk) Andreas Tille <andreas@an3as.eu> - 2016-01-30 15:00 +0100
                Re: Packaging maven-scala-plugin (Was: Help needed for gatk) Emmanuel Bourg <ebourg@apache.org> - 2016-01-30 15:50 +0100
                Re: Packaging maven-scala-plugin (Was: Help needed for gatk) Andreas Tille <andreas@an3as.eu> - 2016-01-30 18:10 +0100
                Re: Packaging maven-scala-plugin (Was: Help needed for gatk) Andrew Schurman <arcticwaters@gmail.com> - 2016-01-30 22:10 +0100
                Re: Packaging maven-scala-plugin (Was: Help needed for gatk) Andreas Tille <andreas@an3as.eu> - 2016-02-01 10:00 +0100
                Re: Packaging maven-scala-plugin (Was: Help needed for gatk) Andrew Schurman <arcticwaters@gmail.com> - 2016-02-01 12:10 +0100
                Re: Packaging maven-scala-plugin (Was: Help needed for gatk) Andreas Tille <andreas@an3as.eu> - 2016-02-01 12:20 +0100
                Re: Packaging maven-scala-plugin (Was: Help needed for gatk) Andrew Schurman <arcticwaters@gmail.com> - 2016-02-01 13:40 +0100
                Re: Packaging maven-scala-plugin (Was: Help needed for gatk) Emmanuel Bourg <ebourg@apache.org> - 2016-02-01 14:40 +0100
                Re: Packaging maven-scala-plugin (Was: Help needed for gatk) Andreas Tille <andreas@an3as.eu> - 2016-02-01 14:50 +0100
                Re: Packaging maven-scala-plugin (Was: Help needed for gatk) Andreas Tille <andreas@an3as.eu> - 2016-02-01 22:00 +0100
                Re: Packaging maven-scala-plugin (Was: Help needed for gatk) David Bernard <david.bernard.31@gmail.com> - 2016-02-01 23:10 +0100
                Re: Packaging maven-scala-plugin (Was: Help needed for gatk) Andreas Tille <andreas@fam-tille.de> - 2016-02-01 23:10 +0100
                Re: Packaging maven-scala-plugin (Was: Help needed for gatk) David Bernard <david.bernard.31@gmail.com> - 2016-02-01 23:20 +0100
                Re: Packaging maven-scala-plugin (Was: Help needed for gatk) Andreas Tille <andreas@an3as.eu> - 2016-02-01 14:40 +0100

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