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Groups > linux.debian.maint.java > #8736
| From | Andreas Tille <andreas@an3as.eu> |
|---|---|
| Newsgroups | linux.debian.maint.java |
| Subject | Re: Help needed for gatk |
| Date | 2016-01-21 10:10 +0100 |
| Message-ID | <qTjpE-39M-3@gated-at.bofh.it> (permalink) |
| References | <qTj6h-2ML-1@gated-at.bofh.it> <qTjfY-2QP-9@gated-at.bofh.it> |
| Organization | linux.* mail to news gateway |
On Thu, Jan 21, 2016 at 09:51:37AM +0100, Thorsten Glaser wrote:
> On Thu, 21 Jan 2016, Andreas Tille wrote:
>
> > I'm lost again with a Java package: gatk[1]. The confusing part from
>
> tglase@tglase:/tmp $ git clone git://anonscm.debian.org/debian-med/gatk.git
> Cloning into 'gatk'...
> Permission denied (publickey).
> fatal: Could not read from remote repository.
Please try
git clone ssh://git.debian.org/git/debian-med/gatk.git
(I hate that what you specify as Vcs-Git can not be used for authorised
clones ...)
> > [WARNING] Some problems were encountered while building the effective model for org.broadinstitute.gatk:gsalib:pom:3.5
> > [WARNING] 'build.plugins.plugin.version' for org.apache.maven.plugins:maven-clean-plugin is missing. @ org.broadinstitute.gatk:gatk-aggregator:3.5, /build/gatk-3.5+dfsg/pom.xml, line 421, column 12
>
> Make sure that all <plugin>s have a <version> child node,
> this became required somewhen with Maven 3 AFAIR.
Something like this
gatk(master) $ find . -name pom.xml -exec grep -H '<version>' \{\} \;
./pom.xml: <version>3.5</version>
./pom.xml: <version>${project.version}</version>
./pom.xml: <version>2.5</version>
./pom.xml: <version>${project.version}</version>
./pom.xml: <version>2.9.1</version>
./pom.xml: <version>${project.version}</version>
./public/pom.xml: <version>3.5</version>
./public/gatk-queue-extensions-public/pom.xml: <version>3.5</version>
./public/gatk-queue-extensions-public/pom.xml: <version>${project.version}</version>
./public/gatk-queue-extensions-public/pom.xml: <version>${project.version}</version>
./public/gatk-queue-extensions-public/pom.xml: <version>${project.version}</version>
./public/gatk-queue-extensions-public/pom.xml: <version>${project.version}</version>
./public/gatk-queue-extensions-public/pom.xml: <version>${project.version}</version>
./public/gatk-tools-public/pom.xml: <version>3.5</version>
./public/gatk-tools-public/pom.xml: <version>${project.version}</version>
./public/gatk-tools-public/pom.xml: <version>${project.version}</version>
./public/gatk-tools-public/pom.xml: <version>${project.version}</version>
./public/package-tests/pom.xml: <version>3.5</version>
./public/package-tests/pom.xml: <version>${project.version}</version>
./public/package-tests/pom.xml: <version>${project.version}</version>
./public/gatk-queue/pom.xml: <version>3.5</version>
./public/gatk-queue/pom.xml: <version>${project.version}</version>
...
???
Kind regards
Andreas.
--
http://fam-tille.de
Back to linux.debian.maint.java | Previous | Next — Previous in thread | Next in thread | Find similar
Help needed for gatk Andreas Tille <andreas@an3as.eu> - 2016-01-21 09:50 +0100
Re: Help needed for gatk Thorsten Glaser <t.glaser@tarent.de> - 2016-01-21 10:00 +0100
Re: Help needed for gatk Andreas Tille <andreas@an3as.eu> - 2016-01-21 10:10 +0100
Re: Help needed for gatk gregor herrmann <gregoa@debian.org> - 2016-01-21 10:10 +0100
Re: Help needed for gatk Thorsten Glaser <t.glaser@tarent.de> - 2016-01-21 10:20 +0100
Re: Help needed for gatk Emmanuel Bourg <ebourg@apache.org> - 2016-01-21 10:30 +0100
Re: Help needed for gatk Andreas Tille <andreas@an3as.eu> - 2016-01-21 10:50 +0100
Re: Help needed for gatk Emmanuel Bourg <ebourg@apache.org> - 2016-01-21 11:10 +0100
Re: Help needed for gatk Andreas Tille <andreas@an3as.eu> - 2016-01-27 15:10 +0100
Re: Help needed for gatk Andrew Schurman <arcticwaters@gmail.com> - 2016-01-28 00:00 +0100
Re: Help needed for gatk Andreas Tille <andreas@an3as.eu> - 2016-01-28 16:30 +0100
Re: Help needed for gatk Andrew Schurman <arcticwaters@gmail.com> - 2016-01-29 19:50 +0100
Re: Help needed for gatk Andreas Tille <andreas@an3as.eu> - 2016-01-29 22:40 +0100
Packaging maven-scala-plugin (Was: Help needed for gatk) Andreas Tille <tille@debian.org> - 2016-01-28 19:40 +0100
Re: Packaging maven-scala-plugin (Was: Help needed for gatk) Andreas Tille <andreas@an3as.eu> - 2016-01-30 15:00 +0100
Re: Packaging maven-scala-plugin (Was: Help needed for gatk) Emmanuel Bourg <ebourg@apache.org> - 2016-01-30 15:50 +0100
Re: Packaging maven-scala-plugin (Was: Help needed for gatk) Andreas Tille <andreas@an3as.eu> - 2016-01-30 18:10 +0100
Re: Packaging maven-scala-plugin (Was: Help needed for gatk) Andrew Schurman <arcticwaters@gmail.com> - 2016-01-30 22:10 +0100
Re: Packaging maven-scala-plugin (Was: Help needed for gatk) Andreas Tille <andreas@an3as.eu> - 2016-02-01 10:00 +0100
Re: Packaging maven-scala-plugin (Was: Help needed for gatk) Andrew Schurman <arcticwaters@gmail.com> - 2016-02-01 12:10 +0100
Re: Packaging maven-scala-plugin (Was: Help needed for gatk) Andreas Tille <andreas@an3as.eu> - 2016-02-01 12:20 +0100
Re: Packaging maven-scala-plugin (Was: Help needed for gatk) Andrew Schurman <arcticwaters@gmail.com> - 2016-02-01 13:40 +0100
Re: Packaging maven-scala-plugin (Was: Help needed for gatk) Emmanuel Bourg <ebourg@apache.org> - 2016-02-01 14:40 +0100
Re: Packaging maven-scala-plugin (Was: Help needed for gatk) Andreas Tille <andreas@an3as.eu> - 2016-02-01 14:50 +0100
Re: Packaging maven-scala-plugin (Was: Help needed for gatk) Andreas Tille <andreas@an3as.eu> - 2016-02-01 22:00 +0100
Re: Packaging maven-scala-plugin (Was: Help needed for gatk) David Bernard <david.bernard.31@gmail.com> - 2016-02-01 23:10 +0100
Re: Packaging maven-scala-plugin (Was: Help needed for gatk) Andreas Tille <andreas@fam-tille.de> - 2016-02-01 23:10 +0100
Re: Packaging maven-scala-plugin (Was: Help needed for gatk) David Bernard <david.bernard.31@gmail.com> - 2016-02-01 23:20 +0100
Re: Packaging maven-scala-plugin (Was: Help needed for gatk) Andreas Tille <andreas@an3as.eu> - 2016-02-01 14:40 +0100
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