Groups > linux.debian.maint.java > #8763

Re: Help needed for gatk

From	Andrew Schurman <arcticwaters@gmail.com>
Newsgroups	linux.debian.maint.java
Subject	Re: Help needed for gatk
Date	2016-01-28 00:00 +0100
Message-ID	<qVHeb-2ip-27@gated-at.bofh.it> (permalink)
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On Wed, 2016-01-27 at 15:08 +0100, Andreas Tille wrote:
> Reading "<goal>compile</goal>" and "<goal>link</goal>" would tell me
> that these are not needed only for testing, right?

Don't confused <goal/> with <phase/>. Goals are named subroutines from
the plugin. Phases are standard Maven names. If you prefer, goals tell
Maven what to use and phases tells it when to build. Check out the
build lifecycle [1] for more info. All of the test-y phases have `test`
in their name.

Goals can also automatically bind to phases if <phase/> is omitted, in
which case you'd have to check the plugin documentation to see exactly
which phase its bound to.

It pretty safe to say the `compile` goal of the maven-scala-plugin
binds to the compile phase, so this plugin is needed (it's just
coincidence they are named the same). As for the maven-junction-plugin, 
it's phase is set to none. So the plugin won't be used regardless of it
listing the `link` goal. You just have to be careful that profile
activations or other configuration don't change that phase on you, then
it may actually be needed (config is merged).

> Just to make sure I'm
> heading in the right direction:
> 
>   scala: https://github.com/davidB/scala-maven-plugin
>    (this seems to be outdated: http://scala-tools.org/mvnsites/maven-
> scala-plugin/)

The one from scala-tools.org may appear to be outdated, but it is the
plugin that's used. The one from github has a different groupId which
means it could be a fork, a rewrite or something completely different.
It may be easier to stick with plugin that was actually used otherwise
you'd have to maintain that change.

Andrew

[1] https://maven.apache.org/guides/introduction/introduction-to-the-li
fecycle.html

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Thread

Help needed for gatk Andreas Tille <andreas@an3as.eu> - 2016-01-21 09:50 +0100
  Re: Help needed for gatk Thorsten Glaser <t.glaser@tarent.de> - 2016-01-21 10:00 +0100
    Re: Help needed for gatk Andreas Tille <andreas@an3as.eu> - 2016-01-21 10:10 +0100
      Re: Help needed for gatk gregor herrmann <gregoa@debian.org> - 2016-01-21 10:10 +0100
      Re: Help needed for gatk Thorsten Glaser <t.glaser@tarent.de> - 2016-01-21 10:20 +0100
        Re: Help needed for gatk Emmanuel Bourg <ebourg@apache.org> - 2016-01-21 10:30 +0100
          Re: Help needed for gatk Andreas Tille <andreas@an3as.eu> - 2016-01-21 10:50 +0100
            Re: Help needed for gatk Emmanuel Bourg <ebourg@apache.org> - 2016-01-21 11:10 +0100
              Re: Help needed for gatk Andreas Tille <andreas@an3as.eu> - 2016-01-27 15:10 +0100
                Re: Help needed for gatk Andrew Schurman <arcticwaters@gmail.com> - 2016-01-28 00:00 +0100
                Re: Help needed for gatk Andreas Tille <andreas@an3as.eu> - 2016-01-28 16:30 +0100
                Re: Help needed for gatk Andrew Schurman <arcticwaters@gmail.com> - 2016-01-29 19:50 +0100
                Re: Help needed for gatk Andreas Tille <andreas@an3as.eu> - 2016-01-29 22:40 +0100
                Packaging maven-scala-plugin (Was: Help needed for gatk) Andreas Tille <tille@debian.org> - 2016-01-28 19:40 +0100
                Re: Packaging maven-scala-plugin (Was: Help needed for gatk) Andreas Tille <andreas@an3as.eu> - 2016-01-30 15:00 +0100
                Re: Packaging maven-scala-plugin (Was: Help needed for gatk) Emmanuel Bourg <ebourg@apache.org> - 2016-01-30 15:50 +0100
                Re: Packaging maven-scala-plugin (Was: Help needed for gatk) Andreas Tille <andreas@an3as.eu> - 2016-01-30 18:10 +0100
                Re: Packaging maven-scala-plugin (Was: Help needed for gatk) Andrew Schurman <arcticwaters@gmail.com> - 2016-01-30 22:10 +0100
                Re: Packaging maven-scala-plugin (Was: Help needed for gatk) Andreas Tille <andreas@an3as.eu> - 2016-02-01 10:00 +0100
                Re: Packaging maven-scala-plugin (Was: Help needed for gatk) Andrew Schurman <arcticwaters@gmail.com> - 2016-02-01 12:10 +0100
                Re: Packaging maven-scala-plugin (Was: Help needed for gatk) Andreas Tille <andreas@an3as.eu> - 2016-02-01 12:20 +0100
                Re: Packaging maven-scala-plugin (Was: Help needed for gatk) Andrew Schurman <arcticwaters@gmail.com> - 2016-02-01 13:40 +0100
                Re: Packaging maven-scala-plugin (Was: Help needed for gatk) Emmanuel Bourg <ebourg@apache.org> - 2016-02-01 14:40 +0100
                Re: Packaging maven-scala-plugin (Was: Help needed for gatk) Andreas Tille <andreas@an3as.eu> - 2016-02-01 14:50 +0100
                Re: Packaging maven-scala-plugin (Was: Help needed for gatk) Andreas Tille <andreas@an3as.eu> - 2016-02-01 22:00 +0100
                Re: Packaging maven-scala-plugin (Was: Help needed for gatk) David Bernard <david.bernard.31@gmail.com> - 2016-02-01 23:10 +0100
                Re: Packaging maven-scala-plugin (Was: Help needed for gatk) Andreas Tille <andreas@fam-tille.de> - 2016-02-01 23:10 +0100
                Re: Packaging maven-scala-plugin (Was: Help needed for gatk) David Bernard <david.bernard.31@gmail.com> - 2016-02-01 23:20 +0100
                Re: Packaging maven-scala-plugin (Was: Help needed for gatk) Andreas Tille <andreas@an3as.eu> - 2016-02-01 14:40 +0100

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