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Groups > linux.debian.maint.java > #8738

Re: Help needed for gatk

From Thorsten Glaser <t.glaser@tarent.de>
Newsgroups linux.debian.maint.java
Subject Re: Help needed for gatk
Date 2016-01-21 10:20 +0100
Message-ID <qTjzk-3d6-9@gated-at.bofh.it> (permalink)
References <qTj6h-2ML-1@gated-at.bofh.it> <qTjfY-2QP-9@gated-at.bofh.it> <qTjpE-39M-3@gated-at.bofh.it>
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On Thu, 21 Jan 2016, Andreas Tille wrote:

> Please try
> 
>    git clone ssh://git.debian.org/git/debian-med/gatk.git

OK, that works better.

Indeed, all those plugins are not versioned:

                <plugin>
                    <groupId>org.scala-tools</groupId>
                    <artifactId>maven-scala-plugin</artifactId>
                    <executions>
                        <execution>
                            <goals>
                                <goal>compile</goal>
                                <goal>testCompile</goal>
                            </goals>
                        </execution>
                    </executions>
                </plugin>

(one example that actually fits on one screen page ;)

Add <version>something</version> behind </artifactId>
and have fun trying to figure out which version to use
(I normally run it with maven2 here, then look at its
output to see which versions it decides to automagically
use, then hardcode them in the POM, then check whether
it works with maven 3 and hack until it does).

bye,
//mirabilos
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Thread

Help needed for gatk Andreas Tille <andreas@an3as.eu> - 2016-01-21 09:50 +0100
  Re: Help needed for gatk Thorsten Glaser <t.glaser@tarent.de> - 2016-01-21 10:00 +0100
    Re: Help needed for gatk Andreas Tille <andreas@an3as.eu> - 2016-01-21 10:10 +0100
      Re: Help needed for gatk gregor herrmann <gregoa@debian.org> - 2016-01-21 10:10 +0100
      Re: Help needed for gatk Thorsten Glaser <t.glaser@tarent.de> - 2016-01-21 10:20 +0100
        Re: Help needed for gatk Emmanuel Bourg <ebourg@apache.org> - 2016-01-21 10:30 +0100
          Re: Help needed for gatk Andreas Tille <andreas@an3as.eu> - 2016-01-21 10:50 +0100
            Re: Help needed for gatk Emmanuel Bourg <ebourg@apache.org> - 2016-01-21 11:10 +0100
              Re: Help needed for gatk Andreas Tille <andreas@an3as.eu> - 2016-01-27 15:10 +0100
                Re: Help needed for gatk Andrew Schurman <arcticwaters@gmail.com> - 2016-01-28 00:00 +0100
                Re: Help needed for gatk Andreas Tille <andreas@an3as.eu> - 2016-01-28 16:30 +0100
                Re: Help needed for gatk Andrew Schurman <arcticwaters@gmail.com> - 2016-01-29 19:50 +0100
                Re: Help needed for gatk Andreas Tille <andreas@an3as.eu> - 2016-01-29 22:40 +0100
                Packaging maven-scala-plugin (Was: Help needed for gatk) Andreas Tille <tille@debian.org> - 2016-01-28 19:40 +0100
                Re: Packaging maven-scala-plugin (Was: Help needed for gatk) Andreas Tille <andreas@an3as.eu> - 2016-01-30 15:00 +0100
                Re: Packaging maven-scala-plugin (Was: Help needed for gatk) Emmanuel Bourg <ebourg@apache.org> - 2016-01-30 15:50 +0100
                Re: Packaging maven-scala-plugin (Was: Help needed for gatk) Andreas Tille <andreas@an3as.eu> - 2016-01-30 18:10 +0100
                Re: Packaging maven-scala-plugin (Was: Help needed for gatk) Andrew Schurman <arcticwaters@gmail.com> - 2016-01-30 22:10 +0100
                Re: Packaging maven-scala-plugin (Was: Help needed for gatk) Andreas Tille <andreas@an3as.eu> - 2016-02-01 10:00 +0100
                Re: Packaging maven-scala-plugin (Was: Help needed for gatk) Andrew Schurman <arcticwaters@gmail.com> - 2016-02-01 12:10 +0100
                Re: Packaging maven-scala-plugin (Was: Help needed for gatk) Andreas Tille <andreas@an3as.eu> - 2016-02-01 12:20 +0100
                Re: Packaging maven-scala-plugin (Was: Help needed for gatk) Andrew Schurman <arcticwaters@gmail.com> - 2016-02-01 13:40 +0100
                Re: Packaging maven-scala-plugin (Was: Help needed for gatk) Emmanuel Bourg <ebourg@apache.org> - 2016-02-01 14:40 +0100
                Re: Packaging maven-scala-plugin (Was: Help needed for gatk) Andreas Tille <andreas@an3as.eu> - 2016-02-01 14:50 +0100
                Re: Packaging maven-scala-plugin (Was: Help needed for gatk) Andreas Tille <andreas@an3as.eu> - 2016-02-01 22:00 +0100
                Re: Packaging maven-scala-plugin (Was: Help needed for gatk) David Bernard <david.bernard.31@gmail.com> - 2016-02-01 23:10 +0100
                Re: Packaging maven-scala-plugin (Was: Help needed for gatk) Andreas Tille <andreas@fam-tille.de> - 2016-02-01 23:10 +0100
                Re: Packaging maven-scala-plugin (Was: Help needed for gatk) David Bernard <david.bernard.31@gmail.com> - 2016-02-01 23:20 +0100
                Re: Packaging maven-scala-plugin (Was: Help needed for gatk) Andreas Tille <andreas@an3as.eu> - 2016-02-01 14:40 +0100

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