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Re: Help for Python mock test suite needed (Was: Any help with problem of srst2 new versions tests suite failing to call bowtie2)

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Hi Scott,

On Sat, Aug 13, 2016 at 12:41:42PM -0400, Scott Kitterman wrote:
> > > 
> > > Any more complete hint from a possibly bowtie2 user would be helpful
> > > 
> > >      Andreas.
> > > 
> > > [1] svn://anonscm.debian.org/debian-med/trunk/packages/srst2/trunk/
> 
> A link to a build log showing the test failure might be helpful.

There is no such link.  If it helps I could migrate from SVN to Git which
might lower the barrier for reproducing the issue.  The interesting part
of the build log is

cd tests && python test_slurm_srst2.py && python test_srst2.py 
...........
----------------------------------------------------------------------
Ran 11 tests in 0.040s

OK
.............FF..
======================================================================
FAIL: test_run_bowtie_with_defaults (__main__.TestRunBowtie)
----------------------------------------------------------------------
Traceback (most recent call last):
  File "/usr/lib/python2.7/dist-packages/mock/mock.py", line 1305, in patched
    return func(*args, **keywargs)
  File "test_srst2.py", line 213, in test_run_bowtie_with_defaults
    run_mock.assert_called_once_with(expected_bowtie2_command)
  File "/usr/lib/python2.7/dist-packages/mock/mock.py", line 947, in assert_called_once_with
    raise AssertionError(msg)
AssertionError: Expected 'run_command' to be called once. Called 0 times.

======================================================================
FAIL: test_run_bowtie_with_overide (__main__.TestRunBowtie)
----------------------------------------------------------------------
Traceback (most recent call last):
  File "/usr/lib/python2.7/dist-packages/mock/mock.py", line 1305, in patched
    return func(*args, **keywargs)
  File "test_srst2.py", line 180, in test_run_bowtie_with_overide
    run_mock.assert_called_once_with(expected_bowtie2_command)
  File "/usr/lib/python2.7/dist-packages/mock/mock.py", line 947, in assert_called_once_with
    raise AssertionError(msg)
AssertionError: Expected 'run_command' to be called once. Called 0 times.

----------------------------------------------------------------------
Ran 17 tests in 0.060s

FAILED (failures=2)


Kind regards

       Andreas.


-- 
http://fam-tille.de

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Help for Python mock test suite needed (Was: Any help with problem  of srst2 new versions tests suite failing to call bowtie2) Andreas Tille <andreas@an3as.eu> - 2016-08-13 08:50 +0200
  Re: Help for Python mock test suite needed (Was: Any help with problem of srst2 new versions tests suite failing to call bowtie2) Scott Kitterman <debian@kitterman.com> - 2016-08-13 18:50 +0200
    Re: Help for Python mock test suite needed (Was: Any help with  problem of srst2 new versions tests suite failing to call bowtie2) Andreas Tille <andreas@an3as.eu> - 2016-08-14 00:30 +0200
      Re: Help for Python mock test suite needed Ben Finney <ben+debian@benfinney.id.au> - 2016-08-14 02:50 +0200
        Re: Help for Python mock test suite needed Andreas Tille <andreas@an3as.eu> - 2016-08-14 08:20 +0200
          Re: Help for Python mock test suite needed Ben Finney <ben+debian@benfinney.id.au> - 2016-08-14 21:10 +0200
            Re: Help for Python mock test suite needed Andreas Tille <andreas@an3as.eu> - 2016-08-15 12:00 +0200
              Re: Help for Python mock test suite needed Ben Finney <ben+debian@benfinney.id.au> - 2016-08-15 22:30 +0200
                Re: Help for Python mock test suite needed Andreas Tille <andreas@an3as.eu> - 2016-08-17 14:00 +0200
                Re: Help for Python mock test suite needed Barry Warsaw <barry@debian.org> - 2016-08-17 15:30 +0200

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