Path: csiph.com!news.mixmin.net!news.unit0.net!news.panservice.it!diesel.cu.mi.it!bofh.it!news.nic.it!robomod From: Andreas Tille Newsgroups: linux.debian.maint.python Subject: Re: Help for Python mock test suite needed (Was: Any help with problem of srst2 new versions tests suite failing to call bowtie2) Date: Sun, 14 Aug 2016 00:30:01 +0200 Message-ID: References: X-Mailbox-Line: From debian-python-request@lists.debian.org Sat Aug 13 22:22:44 2016 Old-Return-Path: X-Amavis-Spam-Status: No, score=-6.167 tagged_above=-10000 required=5.3 tests=[BAYES_00=-2, FOURLA=0.1, LDO_WHITELIST=-5, MEDS2=2, MURPHY_DRUGS_REL8=0.02, RP_MATCHES_RCVD=-1.287] autolearn=ham autolearn_force=no X-Policyd-Weight: using cached result; rate:hard: -6.1 MIME-Version: 1.0 Content-Type: text/plain; charset=us-ascii Content-Disposition: inline User-Agent: Mutt/1.5.23 (2014-03-12) X-Mailing-List: archive/latest/14102 List-ID: List-URL: List-Archive: https://lists.debian.org/msgid-search/20160813222229.GI22254@an3as.eu Approved: robomod@news.nic.it Lines: 60 Organization: linux.* mail to news gateway Sender: robomod@news.nic.it X-Original-Date: Sun, 14 Aug 2016 00:22:29 +0200 X-Original-Message-ID: <20160813222229.GI22254@an3as.eu> X-Original-References: <20160809213240.GA22935@an3as.eu> <20160813064034.GA22254@an3as.eu> <2201782.mV6MicLdnE@kitterma-e6430> Xref: csiph.com linux.debian.maint.python:8761 Hi Scott, On Sat, Aug 13, 2016 at 12:41:42PM -0400, Scott Kitterman wrote: > > > > > > Any more complete hint from a possibly bowtie2 user would be helpful > > > > > > Andreas. > > > > > > [1] svn://anonscm.debian.org/debian-med/trunk/packages/srst2/trunk/ > > A link to a build log showing the test failure might be helpful. There is no such link. If it helps I could migrate from SVN to Git which might lower the barrier for reproducing the issue. The interesting part of the build log is cd tests && python test_slurm_srst2.py && python test_srst2.py ........... ---------------------------------------------------------------------- Ran 11 tests in 0.040s OK .............FF.. ====================================================================== FAIL: test_run_bowtie_with_defaults (__main__.TestRunBowtie) ---------------------------------------------------------------------- Traceback (most recent call last): File "/usr/lib/python2.7/dist-packages/mock/mock.py", line 1305, in patched return func(*args, **keywargs) File "test_srst2.py", line 213, in test_run_bowtie_with_defaults run_mock.assert_called_once_with(expected_bowtie2_command) File "/usr/lib/python2.7/dist-packages/mock/mock.py", line 947, in assert_called_once_with raise AssertionError(msg) AssertionError: Expected 'run_command' to be called once. Called 0 times. ====================================================================== FAIL: test_run_bowtie_with_overide (__main__.TestRunBowtie) ---------------------------------------------------------------------- Traceback (most recent call last): File "/usr/lib/python2.7/dist-packages/mock/mock.py", line 1305, in patched return func(*args, **keywargs) File "test_srst2.py", line 180, in test_run_bowtie_with_overide run_mock.assert_called_once_with(expected_bowtie2_command) File "/usr/lib/python2.7/dist-packages/mock/mock.py", line 947, in assert_called_once_with raise AssertionError(msg) AssertionError: Expected 'run_command' to be called once. Called 0 times. ---------------------------------------------------------------------- Ran 17 tests in 0.060s FAILED (failures=2) Kind regards Andreas. -- http://fam-tille.de