Groups > linux.debian.maint.java > #11798

Re: Upgrading freehep to latest upstream (needed by cdk and probably others)

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From	Andreas Tille <tille@debian.org>
Newsgroups	linux.debian.maint.java
Subject	Re: Upgrading freehep to latest upstream (needed by cdk and probably others)
Date	Sun, 26 Jul 2020 10:40:01 +0200
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Hi Andrius,

On Fri, Jul 24, 2020 at 08:11:29AM +0300, merkys@debian.org wrote:
> On 2020-07-23 17:55, Andreas Tille wrote:
> > Would you mind to update cdk package (which was the original issue
> > I stumbled upon freehep)?
> 
> I have updated cdk yesterday. The cdk-depict module is built now.

Thanks a lot.  Unfortunately I have remaining issues with r-cran-rcdk.
If I try to build it I get:

Executing test function test.mcs2  ... Error in .jcall("org.guha.rcdk.util.Misc", "Lorg/openscience/cdk/interfaces/IAtomContainer;",  :.
  java.lang.NoClassDefFoundError: org/openscience/cdk/smsd/Isomorphism
Timing stopped at: 0.022 0 0.007
 done successfully.

It actually seems that org/openscience/cdk/smsd/Isomorphism is not
part of the currently packaged CDK.  Any idea how to solve this?

Kind regards

       Andreas.

-- 
http://fam-tille.de

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Thread

Upgrading freehep to latest upstream (needed by cdk and probably  others) Andreas Tille <andreas@an3as.eu> - 2020-04-15 15:00 +0200
  Re: Upgrading freehep to latest upstream (needed by cdk and probably  others) Andreas Tille <tille@debian.org> - 2020-04-21 07:00 +0200
  Re: Upgrading freehep to latest upstream (needed by cdk and probably  others) Andreas Tille <tille@debian.org> - 2020-04-28 11:00 +0200
  Re: Upgrading freehep to latest upstream (needed by cdk and probably  others) Andreas Tille <tille@debian.org> - 2020-07-01 11:40 +0200
  Re: Upgrading freehep to latest upstream (needed by cdk and probably  others) Emmanuel Bourg <ebourg@apache.org> - 2020-07-02 01:40 +0200
    Re: Upgrading freehep to latest upstream (needed by cdk and probably  others) Andreas Tille <tille@debian.org> - 2020-07-15 15:00 +0200
      Re: Upgrading freehep to latest upstream (needed by cdk and probably  others) Andreas Tille <andreas@an3as.eu> - 2020-07-23 17:00 +0200
        Re: Upgrading freehep to latest upstream (needed by cdk and probably  others) Andreas Tille <tille@debian.org> - 2020-07-26 10:40 +0200
          Re: Upgrading freehep to latest upstream (needed by cdk and probably  others) tony mancill <tmancill@debian.org> - 2020-07-27 07:40 +0200
            Re: Building r-cran-rcdk with cdk [Was: Re: Upgrading freehep to  latest upstream (needed by cdk and probably others)] tony mancill <tmancill@debian.org> - 2020-07-27 16:00 +0200
              Re: Building r-cran-rcdk with cdk [Was: Re: Upgrading freehep to  latest upstream (needed by cdk and probably others)] tony mancill <tmancill@debian.org> - 2020-07-29 05:50 +0200
                Re: Building r-cran-rcdk with cdk [Was: Re: Upgrading freehep to  latest upstream (needed by cdk and probably others)] Andreas Tille <andreas@an3as.eu> - 2020-07-29 09:30 +0200

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