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Groups > linux.debian.bugs.dist > #1172960

Bug#1054657: transition: r-bioc-biocgenerics

From Andreas Tille <tille@debian.org>
Newsgroups linux.debian.bugs.dist, linux.debian.devel.release
Subject Bug#1054657: transition: r-bioc-biocgenerics
Date 2023-10-27 16:10 +0200
Message-ID <HtvHb-1eUN-1@gated-at.bofh.it> (permalink)
Organization linux.* mail to news gateway

Cross-posted to 2 groups.

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Package: release.debian.org
Severity: normal
User: release.debian.org@packages.debian.org
Usertags: transition
X-Debbugs-Cc: r-bioc-biocgenerics@packages.debian.org, debian-r@lists.debian.org
Control: affects -1 + src:r-bioc-biocgenerics

Hi,

BioConductor has just released version 3.17.  Since the next r-base
release is pending on 2023-10-31 we do not think it is a good idea to
start the transition before but it might make sense to open this bug
right now.  (No idea whether we will see a proper r-api transition but
building everything against the new r-base sounds like less hassle
than doing r-api-bioc transition right now.)
The BioConductor transition will bump the virtual package
r-api-bioc-3.17 to r-api-bioc-3.18.

BTW, I'm aware that a couple of r-bioc-* packages did not yet migrated
to testing due to some autopkgtest issues on some architectures.  We
decided that it makes sense to do the transition first and approach
upstream about their latest release in case those issues might remain.

Kind regards and thanks a lot for your work as release team
    Andreas.

Ben file:

title = "r-bioc-biocgenerics";
is_affected = .depends ~ "r-api-bioc-3.17" | .depends ~ "r-api-bioc-3.18";
is_good = .depends ~ "r-api-bioc-3.18";
is_bad = .depends ~ "r-api-bioc-3.17";

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Thread

Bug#1054657: transition: r-bioc-biocgenerics Andreas Tille <tille@debian.org> - 2023-10-27 16:10 +0200
  Bug#1054657: transition: r-bioc-biocgenerics Dirk Eddelbuettel <edd@debian.org> - 2023-10-27 16:30 +0200
    Bug#1054657: transition: r-bioc-biocgenerics Andreas Tille <andreas@an3as.eu> - 2023-10-27 16:50 +0200
      Bug#1054657: transition: r-bioc-biocgenerics Dirk Eddelbuettel <edd@debian.org> - 2023-10-27 18:40 +0200
  Bug#1054657: transition: r-bioc-biocgenerics Graham Inggs <ginggs@debian.org> - 2023-10-28 19:00 +0200
    Bug#1054657: transition: r-bioc-biocgenerics Andreas Tille <tille@debian.org> - 2023-10-29 06:40 +0100
      Bug#1054657: transition: r-bioc-biocgenerics Graham Inggs <ginggs@debian.org> - 2023-10-29 17:10 +0100
        Bug#1054657: transition: r-bioc-biocgenerics Andreas Tille <tille@debian.org> - 2023-10-29 18:10 +0100
          Bug#1054657: transition: r-bioc-biocgenerics Graham Inggs <ginggs@debian.org> - 2023-11-01 11:10 +0100
            Bug#1054657: transition: r-bioc-biocgenerics Andreas Tille <tille@debian.org> - 2023-11-01 11:40 +0100
              Bug#1054657: transition: r-bioc-biocgenerics Charles Plessy <plessy@debian.org> - 2023-11-03 02:10 +0100
                Bug#1054657: transition: r-bioc-biocgenerics Andreas Tille <tille@debian.org> - 2023-11-07 06:50 +0100
                Bug#1054657: transition: r-bioc-biocgenerics Sebastian Ramacher <sramacher@debian.org> - 2023-11-07 11:00 +0100
                Bug#1054657: transition: r-bioc-biocgenerics Charles Plessy <plessy@debian.org> - 2023-11-07 14:10 +0100
                Bug#1054657: transition: r-bioc-biocgenerics Dirk Eddelbuettel <edd@debian.org> - 2023-11-07 14:50 +0100
                Bug#1054657: transition: r-bioc-biocgenerics Andreas Tille <tille@debian.org> - 2023-11-07 15:10 +0100
                Bug#1054657: transition: r-bioc-biocgenerics Dirk Eddelbuettel <edd@debian.org> - 2023-11-07 19:40 +0100
                Bug#1054657: transition: r-bioc-biocgenerics Andreas Tille <tille@debian.org> - 2023-11-07 21:10 +0100
                Bug#1054657: transition: r-bioc-biocgenerics Andreas Tille <tille@debian.org> - 2023-11-07 14:40 +0100
                Bug#1054657: transition: r-bioc-biocgenerics Sebastian Ramacher <sramacher@debian.org> - 2023-11-07 15:20 +0100
                Bug#1054657: transition: r-bioc-biocgenerics Andreas Tille <tille@debian.org> - 2023-11-07 18:10 +0100
        Bug#1054657: transition: r-bioc-biocgenerics Charles Plessy <plessy@debian.org> - 2023-11-01 08:40 +0100
  Bug#1054657: transition: r-bioc-biocgenerics Charles Plessy <plessy@debian.org> - 2023-11-09 15:10 +0100
    Bug#1054657: transition: r-bioc-biocgenerics Charles Plessy <plessy@debian.org> - 2023-11-10 09:50 +0100
      Bug#1054657: transition: r-bioc-biocgenerics Andreas Tille <tille@debian.org> - 2023-11-10 12:10 +0100
      Bug#1054657: transition: r-bioc-biocgenerics Sebastian Ramacher <sramacher@debian.org> - 2023-11-10 23:40 +0100
        Bug#1054657: transition: r-bioc-biocgenerics Charles Plessy <plessy@debian.org> - 2023-11-11 01:50 +0100
  Bug#1054657: transition: r-bioc-biocgenerics Andreas Tille <tille@debian.org> - 2023-11-10 23:40 +0100
    Bug#1054657: transition: r-bioc-biocgenerics Andreas Tille <tille@debian.org> - 2023-11-13 11:20 +0100
      Bug#1054657: transition: r-bioc-biocgenerics Graham Inggs <ginggs@debian.org> - 2023-11-19 16:40 +0100
      Bug#1054657: transition: r-bioc-biocgenerics Andreas Tille <andreas@an3as.eu> - 2023-11-22 21:00 +0100
        Bug#1054657: transition: r-bioc-biocgenerics Charles Plessy <plessy@debian.org> - 2023-11-28 01:30 +0100
          Bug#1054657: transition: r-bioc-biocgenerics Andreas Tille <tille@debian.org> - 2023-11-28 10:30 +0100
  Bug#1054657: r-bioc-sparsearray_1.0.12+dfsg-1_amd64.changes is NEW Andreas Tille <andreas@an3as.eu> - 2023-11-13 10:30 +0100
  Bug#1054657: transition: r-bioc-biocgenerics Andreas Tille <tille@debian.org> - 2023-11-24 22:30 +0100
  Bug#1054657: Transition issue for r-cran-rstanarm (Was: Bug#1055922: rmatrix: ABI change in Matrix 1.6-2) Andreas Tille <andreas@an3as.eu> - 2023-11-26 17:30 +0100
    Bug#1054657: Transition issue for r-cran-rstanarm (Was: Bug#1055922: rmatrix: ABI change in Matrix 1.6-2) Andreas Tille <andreas@an3as.eu> - 2023-11-28 10:20 +0100
  Bug#1054657: Transition issue for r-cran-rstanarm (Was: Bug#1055922: rmatrix: ABI change in Matrix 1.6-2) Graham Inggs <ginggs@debian.org> - 2023-11-28 11:40 +0100
    Bug#1054657: Transition issue for r-cran-rstanarm (Was: Bug#1055922: rmatrix: ABI change in Matrix 1.6-2) Andreas Tille <tille@debian.org> - 2023-11-28 16:00 +0100
      Bug#1054657: Transition issue for r-cran-rstanarm (Was: Bug#1055922: rmatrix: ABI change in Matrix 1.6-2) Graham Inggs <ginggs@debian.org> - 2023-11-29 14:40 +0100
  Bug#1054657: Transition seems to be blocked (Was: Bug#1054657: transition: r-bioc-biocgenerics) Andreas Tille <andreas@an3as.eu> - 2023-12-03 09:30 +0100
    Bug#1054657: Transition seems to be blocked (Was: Bug#1054657: transition: r-bioc-biocgenerics) Graham Inggs <ginggs@debian.org> - 2023-12-03 11:50 +0100
      Bug#1054657: Transition seems to be blocked (Was: Bug#1054657: transition: r-bioc-biocgenerics) Adrian Bunk <bunk@debian.org> - 2023-12-03 22:20 +0100
        Bug#1054657: Transition seems to be blocked (Was: Bug#1054657: transition: r-bioc-biocgenerics) Sebastian Ramacher <sramacher@debian.org> - 2023-12-05 15:50 +0100
    Bug#1054657: Transition seems to be blocked (Was: Bug#1054657: transition: r-bioc-biocgenerics) Graham Inggs <ginggs@debian.org> - 2023-12-07 15:40 +0100
      Bug#1054657: Transition seems to be blocked (Was: Bug#1054657: transition: r-bioc-biocgenerics) Andreas Tille <tille@debian.org> - 2023-12-07 16:20 +0100
        Bug#1054657: Transition seems to be blocked (Was: Bug#1054657: transition: r-bioc-biocgenerics) Andreas Tille <tille@debian.org> - 2023-12-07 16:40 +0100
        Bug#1054657: Transition seems to be blocked (Was: Bug#1054657: transition: r-bioc-biocgenerics) Adrian Bunk <bunk@debian.org> - 2023-12-07 19:40 +0100
        Bug#1054657: Transition seems to be blocked (Was: Bug#1054657: transition: r-bioc-biocgenerics) Sebastian Ramacher <sramacher@debian.org> - 2023-12-11 11:40 +0100
          Bug#1054657: Transition seems to be blocked (Was: Bug#1054657: transition: r-bioc-biocgenerics) Andreas Tille <tille@debian.org> - 2023-12-11 13:40 +0100
            Bug#1054657: Transition seems to be blocked (Was: Bug#1054657: transition: r-bioc-biocgenerics) Sebastian Ramacher <sramacher@debian.org> - 2023-12-11 13:40 +0100
              Bug#1054657: Transition seems to be blocked (Was: Bug#1054657: transition: r-bioc-biocgenerics) Andreas Tille <tille@debian.org> - 2023-12-11 17:10 +0100
                Bug#1054657: Transition seems to be blocked (Was: Bug#1054657: transition: r-bioc-biocgenerics) Sebastian Ramacher <sramacher@debian.org> - 2023-12-11 18:00 +0100
      Bug#1054657: Transition seems to be blocked (Was: Bug#1054657: transition: r-bioc-biocgenerics) Charles Plessy <plessy@debian.org> - 2023-12-08 17:10 +0100
        Bug#1054657: Transition seems to be blocked (Was: Bug#1054657: transition: r-bioc-biocgenerics) Dirk Eddelbuettel <edd@debian.org> - 2023-12-08 17:40 +0100
    Bug#1054657: Transition ready? (Was: Transition seems to be blocked (Was: Bug#1054657: transition: r-bioc-biocgenerics)) Andreas Tille <andreas@an3as.eu> - 2023-12-13 11:50 +0100
      Bug#1054657: Transition ready? (Was: Transition seems to be blocked (Was: Bug#1054657: transition: r-bioc-biocgenerics)) Adrian Bunk <bunk@debian.org> - 2023-12-13 13:30 +0100
      Bug#1054657: Transition ready? (Was: Transition seems to be blocked (Was: Bug#1054657: transition: r-bioc-biocgenerics)) Graham Inggs <ginggs@debian.org> - 2023-12-13 14:20 +0100
        Bug#1054657: Transition ready? (Was: Transition seems to be blocked (Was: Bug#1054657: transition: r-bioc-biocgenerics)) Andreas Tille <tille@debian.org> - 2023-12-13 17:10 +0100
  Bug#1054657: Transition seems to be blocked (Was: Bug#1054657: transition: r-bioc-biocgenerics) Adrian Bunk <bunk@debian.org> - 2023-12-03 22:20 +0100
    Bug#1054657: Transition seems to be blocked (Was: Bug#1054657: transition: r-bioc-biocgenerics) Andreas Tille <tille@debian.org> - 2023-12-05 14:40 +0100
  Bug#1054657: Transition seems to be blocked (Was: Bug#1054657: transition: r-bioc-biocgenerics) Andreas Tille <tille@debian.org> - 2023-12-04 06:40 +0100
  Bug#1054657: Source download of DeMixT broken Andreas Tille <andreas@an3as.eu> - 2023-12-08 16:10 +0100
    Bug#1054657: Source download of DeMixT broken Andreas Tille <andreas@fam-tille.de> - 2023-12-12 15:10 +0100
  Bug#1054657: Source archive of DSS missing Andreas Tille <andreas@fam-tille.de> - 2023-12-08 16:10 +0100
    Bug#1054657: Source archive of DSS missing Andreas Tille <andreas@fam-tille.de> - 2023-12-12 15:20 +0100
  Bug#1054657: Transition ready? (Was: Transition seems to be blocked (Was: Bug#1054657: transition: r-bioc-biocgenerics)) Andreas Tille <tille@debian.org> - 2023-12-14 09:10 +0100
  Bug#1054657: Transition ready? (Was: Transition seems to be blocked (Was: Bug#1054657: transition: r-bioc-biocgenerics)) Graham Inggs <ginggs@debian.org> - 2023-12-17 16:20 +0100
    Bug#1054657: Transition ready? (Was: Transition seems to be blocked (Was: Bug#1054657: transition: r-bioc-biocgenerics)) Andreas Tille <tille@debian.org> - 2023-12-18 10:20 +0100

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