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Groups > linux.debian.bugs.dist > #1176465

Bug#1054657: Transition issue for r-cran-rstanarm (Was: Bug#1055922: rmatrix: ABI change in Matrix 1.6-2)

From Graham Inggs <ginggs@debian.org>
Newsgroups linux.debian.bugs.dist, linux.debian.devel.release
Subject Bug#1054657: Transition issue for r-cran-rstanarm (Was: Bug#1055922: rmatrix: ABI change in Matrix 1.6-2)
Date 2023-11-28 11:40 +0100
Message-ID <HF3Fv-9eeM-7@gated-at.bofh.it> (permalink)
References (10 earlier) <HtvHb-1eUN-1@gated-at.bofh.it> <HF2q5-9cFZ-5@gated-at.bofh.it> <HF3Fv-9eeM-9@gated-at.bofh.it> <HtvHb-1eUN-1@gated-at.bofh.it> <HF3Fv-9eeM-9@gated-at.bofh.it>
Organization linux.* mail to news gateway

Cross-posted to 2 groups.

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Hi All

I'm catching up after some AFK time, so I will just fill in some
details where I can.

On Tue, 28 Nov 2023 at 08:31, Paul Gevers <elbrus@debian.org> wrote:
> > I have no idea why r-cran-seurat is not profiting from reduced waiting
> > time for the transition.
>
> Because its tests fail on armel. The reduction of waiting time is only
> for tests that run successfully on all architectures where they are
> triggered (as in, where at least some of the binaries build by the
> source are installable). As the failure isn't a regression, the
> migration isn't blocked, though.

I noticed this today, and added an age hint for r-cran-seurat so it
should migrate soon.

On Mon, 27 Nov 2023 at 23:22, Charles Plessy <plessy@debian.org> wrote:
> would it be possible to have an estimation about when we can expect to
> start the Bioconductor transition ?

We recently announced that britney now considers mips64el to be an
out-of-sync architecture [1].  We are finding other systems; e.g. UDD
and BTS, also need changes to accommodate this.  We hope to have this
resolved and for you to be able to start your transition within the
next few days.  We don't want to start a big transition and have it
blocked on missing builds or installability issues on mips64el.

On Sun, 26 Nov 2023 at 15:20, Andreas Tille <andreas@an3as.eu> wrote:
> > > r-cran-rstan/r-cran-rstanarm on 2023-10-27 which have not yet
> > > migrated.
>
> I've asked ftpmaster for removal (see bug #1056913) of some architecture
> builds for r-cran-rstan which is preventing the migration of this
> package.

It seems the armel build was retried by someone and it succeeded [2].
Fixing the riscv64 build (where it built previously) would be nice, as
riscv64 is aiming to be a release architecture for trixie, but I do
not see that being a blocker for this transition.

> There is another issue for r-cran-rstan which affects a regression
> for r-cran-projpred for ppc64el architecture[1] which boils down to:
> ...
> It seems something on this architecture is broken I can't do anything
> about.  Could you provide help here?

It looks like this was also retried and succeeded [3].

Regards
Graham


[1] https://lists.debian.org/debian-devel-announce/2023/11/msg00005.html
[2] https://buildd.debian.org/status/package.php?p=r-cran-rstanarm
[3] https://ci.debian.net/packages/r/r-cran-projpred/testing/ppc64el/

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Thread

Bug#1054657: transition: r-bioc-biocgenerics Andreas Tille <tille@debian.org> - 2023-10-27 16:10 +0200
  Bug#1054657: transition: r-bioc-biocgenerics Dirk Eddelbuettel <edd@debian.org> - 2023-10-27 16:30 +0200
    Bug#1054657: transition: r-bioc-biocgenerics Andreas Tille <andreas@an3as.eu> - 2023-10-27 16:50 +0200
      Bug#1054657: transition: r-bioc-biocgenerics Dirk Eddelbuettel <edd@debian.org> - 2023-10-27 18:40 +0200
  Bug#1054657: transition: r-bioc-biocgenerics Graham Inggs <ginggs@debian.org> - 2023-10-28 19:00 +0200
    Bug#1054657: transition: r-bioc-biocgenerics Andreas Tille <tille@debian.org> - 2023-10-29 06:40 +0100
      Bug#1054657: transition: r-bioc-biocgenerics Graham Inggs <ginggs@debian.org> - 2023-10-29 17:10 +0100
        Bug#1054657: transition: r-bioc-biocgenerics Andreas Tille <tille@debian.org> - 2023-10-29 18:10 +0100
          Bug#1054657: transition: r-bioc-biocgenerics Graham Inggs <ginggs@debian.org> - 2023-11-01 11:10 +0100
            Bug#1054657: transition: r-bioc-biocgenerics Andreas Tille <tille@debian.org> - 2023-11-01 11:40 +0100
              Bug#1054657: transition: r-bioc-biocgenerics Charles Plessy <plessy@debian.org> - 2023-11-03 02:10 +0100
                Bug#1054657: transition: r-bioc-biocgenerics Andreas Tille <tille@debian.org> - 2023-11-07 06:50 +0100
                Bug#1054657: transition: r-bioc-biocgenerics Sebastian Ramacher <sramacher@debian.org> - 2023-11-07 11:00 +0100
                Bug#1054657: transition: r-bioc-biocgenerics Charles Plessy <plessy@debian.org> - 2023-11-07 14:10 +0100
                Bug#1054657: transition: r-bioc-biocgenerics Dirk Eddelbuettel <edd@debian.org> - 2023-11-07 14:50 +0100
                Bug#1054657: transition: r-bioc-biocgenerics Andreas Tille <tille@debian.org> - 2023-11-07 15:10 +0100
                Bug#1054657: transition: r-bioc-biocgenerics Dirk Eddelbuettel <edd@debian.org> - 2023-11-07 19:40 +0100
                Bug#1054657: transition: r-bioc-biocgenerics Andreas Tille <tille@debian.org> - 2023-11-07 21:10 +0100
                Bug#1054657: transition: r-bioc-biocgenerics Andreas Tille <tille@debian.org> - 2023-11-07 14:40 +0100
                Bug#1054657: transition: r-bioc-biocgenerics Sebastian Ramacher <sramacher@debian.org> - 2023-11-07 15:20 +0100
                Bug#1054657: transition: r-bioc-biocgenerics Andreas Tille <tille@debian.org> - 2023-11-07 18:10 +0100
        Bug#1054657: transition: r-bioc-biocgenerics Charles Plessy <plessy@debian.org> - 2023-11-01 08:40 +0100
  Bug#1054657: transition: r-bioc-biocgenerics Charles Plessy <plessy@debian.org> - 2023-11-09 15:10 +0100
    Bug#1054657: transition: r-bioc-biocgenerics Charles Plessy <plessy@debian.org> - 2023-11-10 09:50 +0100
      Bug#1054657: transition: r-bioc-biocgenerics Andreas Tille <tille@debian.org> - 2023-11-10 12:10 +0100
      Bug#1054657: transition: r-bioc-biocgenerics Sebastian Ramacher <sramacher@debian.org> - 2023-11-10 23:40 +0100
        Bug#1054657: transition: r-bioc-biocgenerics Charles Plessy <plessy@debian.org> - 2023-11-11 01:50 +0100
  Bug#1054657: transition: r-bioc-biocgenerics Andreas Tille <tille@debian.org> - 2023-11-10 23:40 +0100
    Bug#1054657: transition: r-bioc-biocgenerics Andreas Tille <tille@debian.org> - 2023-11-13 11:20 +0100
      Bug#1054657: transition: r-bioc-biocgenerics Graham Inggs <ginggs@debian.org> - 2023-11-19 16:40 +0100
      Bug#1054657: transition: r-bioc-biocgenerics Andreas Tille <andreas@an3as.eu> - 2023-11-22 21:00 +0100
        Bug#1054657: transition: r-bioc-biocgenerics Charles Plessy <plessy@debian.org> - 2023-11-28 01:30 +0100
          Bug#1054657: transition: r-bioc-biocgenerics Andreas Tille <tille@debian.org> - 2023-11-28 10:30 +0100
  Bug#1054657: r-bioc-sparsearray_1.0.12+dfsg-1_amd64.changes is NEW Andreas Tille <andreas@an3as.eu> - 2023-11-13 10:30 +0100
  Bug#1054657: transition: r-bioc-biocgenerics Andreas Tille <tille@debian.org> - 2023-11-24 22:30 +0100
  Bug#1054657: Transition issue for r-cran-rstanarm (Was: Bug#1055922: rmatrix: ABI change in Matrix 1.6-2) Andreas Tille <andreas@an3as.eu> - 2023-11-26 17:30 +0100
    Bug#1054657: Transition issue for r-cran-rstanarm (Was: Bug#1055922: rmatrix: ABI change in Matrix 1.6-2) Andreas Tille <andreas@an3as.eu> - 2023-11-28 10:20 +0100
  Bug#1054657: Transition issue for r-cran-rstanarm (Was: Bug#1055922: rmatrix: ABI change in Matrix 1.6-2) Graham Inggs <ginggs@debian.org> - 2023-11-28 11:40 +0100
    Bug#1054657: Transition issue for r-cran-rstanarm (Was: Bug#1055922: rmatrix: ABI change in Matrix 1.6-2) Andreas Tille <tille@debian.org> - 2023-11-28 16:00 +0100
      Bug#1054657: Transition issue for r-cran-rstanarm (Was: Bug#1055922: rmatrix: ABI change in Matrix 1.6-2) Graham Inggs <ginggs@debian.org> - 2023-11-29 14:40 +0100
  Bug#1054657: Transition seems to be blocked (Was: Bug#1054657: transition: r-bioc-biocgenerics) Andreas Tille <andreas@an3as.eu> - 2023-12-03 09:30 +0100
    Bug#1054657: Transition seems to be blocked (Was: Bug#1054657: transition: r-bioc-biocgenerics) Graham Inggs <ginggs@debian.org> - 2023-12-03 11:50 +0100
      Bug#1054657: Transition seems to be blocked (Was: Bug#1054657: transition: r-bioc-biocgenerics) Adrian Bunk <bunk@debian.org> - 2023-12-03 22:20 +0100
        Bug#1054657: Transition seems to be blocked (Was: Bug#1054657: transition: r-bioc-biocgenerics) Sebastian Ramacher <sramacher@debian.org> - 2023-12-05 15:50 +0100
    Bug#1054657: Transition seems to be blocked (Was: Bug#1054657: transition: r-bioc-biocgenerics) Graham Inggs <ginggs@debian.org> - 2023-12-07 15:40 +0100
      Bug#1054657: Transition seems to be blocked (Was: Bug#1054657: transition: r-bioc-biocgenerics) Andreas Tille <tille@debian.org> - 2023-12-07 16:20 +0100
        Bug#1054657: Transition seems to be blocked (Was: Bug#1054657: transition: r-bioc-biocgenerics) Andreas Tille <tille@debian.org> - 2023-12-07 16:40 +0100
        Bug#1054657: Transition seems to be blocked (Was: Bug#1054657: transition: r-bioc-biocgenerics) Adrian Bunk <bunk@debian.org> - 2023-12-07 19:40 +0100
        Bug#1054657: Transition seems to be blocked (Was: Bug#1054657: transition: r-bioc-biocgenerics) Sebastian Ramacher <sramacher@debian.org> - 2023-12-11 11:40 +0100
          Bug#1054657: Transition seems to be blocked (Was: Bug#1054657: transition: r-bioc-biocgenerics) Andreas Tille <tille@debian.org> - 2023-12-11 13:40 +0100
            Bug#1054657: Transition seems to be blocked (Was: Bug#1054657: transition: r-bioc-biocgenerics) Sebastian Ramacher <sramacher@debian.org> - 2023-12-11 13:40 +0100
              Bug#1054657: Transition seems to be blocked (Was: Bug#1054657: transition: r-bioc-biocgenerics) Andreas Tille <tille@debian.org> - 2023-12-11 17:10 +0100
                Bug#1054657: Transition seems to be blocked (Was: Bug#1054657: transition: r-bioc-biocgenerics) Sebastian Ramacher <sramacher@debian.org> - 2023-12-11 18:00 +0100
      Bug#1054657: Transition seems to be blocked (Was: Bug#1054657: transition: r-bioc-biocgenerics) Charles Plessy <plessy@debian.org> - 2023-12-08 17:10 +0100
        Bug#1054657: Transition seems to be blocked (Was: Bug#1054657: transition: r-bioc-biocgenerics) Dirk Eddelbuettel <edd@debian.org> - 2023-12-08 17:40 +0100
    Bug#1054657: Transition ready? (Was: Transition seems to be blocked (Was: Bug#1054657: transition: r-bioc-biocgenerics)) Andreas Tille <andreas@an3as.eu> - 2023-12-13 11:50 +0100
      Bug#1054657: Transition ready? (Was: Transition seems to be blocked (Was: Bug#1054657: transition: r-bioc-biocgenerics)) Adrian Bunk <bunk@debian.org> - 2023-12-13 13:30 +0100
      Bug#1054657: Transition ready? (Was: Transition seems to be blocked (Was: Bug#1054657: transition: r-bioc-biocgenerics)) Graham Inggs <ginggs@debian.org> - 2023-12-13 14:20 +0100
        Bug#1054657: Transition ready? (Was: Transition seems to be blocked (Was: Bug#1054657: transition: r-bioc-biocgenerics)) Andreas Tille <tille@debian.org> - 2023-12-13 17:10 +0100
  Bug#1054657: Transition seems to be blocked (Was: Bug#1054657: transition: r-bioc-biocgenerics) Adrian Bunk <bunk@debian.org> - 2023-12-03 22:20 +0100
    Bug#1054657: Transition seems to be blocked (Was: Bug#1054657: transition: r-bioc-biocgenerics) Andreas Tille <tille@debian.org> - 2023-12-05 14:40 +0100
  Bug#1054657: Transition seems to be blocked (Was: Bug#1054657: transition: r-bioc-biocgenerics) Andreas Tille <tille@debian.org> - 2023-12-04 06:40 +0100
  Bug#1054657: Source download of DeMixT broken Andreas Tille <andreas@an3as.eu> - 2023-12-08 16:10 +0100
    Bug#1054657: Source download of DeMixT broken Andreas Tille <andreas@fam-tille.de> - 2023-12-12 15:10 +0100
  Bug#1054657: Source archive of DSS missing Andreas Tille <andreas@fam-tille.de> - 2023-12-08 16:10 +0100
    Bug#1054657: Source archive of DSS missing Andreas Tille <andreas@fam-tille.de> - 2023-12-12 15:20 +0100
  Bug#1054657: Transition ready? (Was: Transition seems to be blocked (Was: Bug#1054657: transition: r-bioc-biocgenerics)) Andreas Tille <tille@debian.org> - 2023-12-14 09:10 +0100
  Bug#1054657: Transition ready? (Was: Transition seems to be blocked (Was: Bug#1054657: transition: r-bioc-biocgenerics)) Graham Inggs <ginggs@debian.org> - 2023-12-17 16:20 +0100
    Bug#1054657: Transition ready? (Was: Transition seems to be blocked (Was: Bug#1054657: transition: r-bioc-biocgenerics)) Andreas Tille <tille@debian.org> - 2023-12-18 10:20 +0100

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