Groups > linux.debian.maint.python > #12427

Re: [RFC] python-cobra, python3-sbml5

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From	Nilesh Patra <npatra974@gmail.com>
Newsgroups	linux.debian.devel.mentors, linux.debian.maint.python
Subject	Re: [RFC] python-cobra, python3-sbml5
Date	Sun, 05 Apr 2020 12:30:01 +0200
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Hi

On Sun, 5 Apr 2020, 11:43 Andreas Tille, <andreas@fam-tille.de> wrote:

> Hi Nilesh,
>
> On Sat, Apr 04, 2020 at 06:53:55PM +0530, Nilesh Patra wrote:
> >
> > >From the logs, in the last message[2] it looks like an import-error for
> > '_libsbml' file which corresponds to libsbml (with python3-sbml5 as a
> > provide) package. When I dug into looking at libsbml, I noticed that the
> > relevant file (libsbml.py) which throws error
> > is generated with swig-3.0 by the upstream [3]
>
> I admit I'm absolutely naive about swig - but if libsbml.py is really
> autogenerated what about re-generating it with swig-4?
>

I think there's a miscommunication here. The file in the archive(on doing
$apt source python3-sbml5) is generated with swig-4 already, while it's
generated with swig-3 upstream.
Hence the issue.


>
> > [1]: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=955656
> >
> > [2]: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=955656#10
> >
> > [3]:
> >
> https://salsa.debian.org/med-team/libsbml/-/blob/master/src/bindings/python/libsbml.py?expanded=true&viewer=simple
> >
> > Thanks and regards
> > Nilesh
>
> --
> http://fam-tille.de
>

Thread

[RFC] python-cobra, python3-sbml5 Nilesh Patra <npatra974@gmail.com> - 2020-04-04 15:50 +0200
  Re: [RFC] python-cobra, python3-sbml5 Andrey Rahmatullin <wrar@debian.org> - 2020-04-04 17:30 +0200
  Re: [RFC] python-cobra, python3-sbml5 Andreas Tille <andreas@fam-tille.de> - 2020-04-05 08:40 +0200
    Re: [RFC] python-cobra, python3-sbml5 Nilesh Patra <npatra974@gmail.com> - 2020-04-05 12:30 +0200
      Re: [RFC] python-cobra, python3-sbml5 Andreas Tille <andreas@an3as.eu> - 2020-04-05 12:30 +0200
        Re: [RFC] python-cobra, python3-sbml5 Nilesh Patra <npatra974@gmail.com> - 2020-04-05 13:00 +0200

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