Groups > linux.debian.maint.python > #10417

Re: Strange encoding problem in setup.py of biopython 1.71

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From	Peter Cock <p.j.a.cock@googlemail.com>
Newsgroups	linux.debian.maint.python
Subject	Re: Strange encoding problem in setup.py of biopython 1.71
Date	Fri, 13 Apr 2018 13:20:01 +0200
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I ended up doing something similar to catch any future
problematic characters:

https://github.com/biopython/biopython/pull/1607

Peter


On Fri, Apr 6, 2018 at 10:36 AM, Peter Cock <p.j.a.cock@googlemail.com> wrote:
> Thanks Andreas,
>
> Piotr, I think your fix would be worth including in Biopython.
>
> Do you want to submit this as a pull request, or give me
> permission to do so by email?
>
> We'd need you to agree to both the Biopython License Agreement
> and the 3-clause BSD licence, and say if you'd like to be
> acknowledged by name or not.
>
> Regards,
>
> Peter
>
> On Fri, Apr 6, 2018 at 8:16 AM, Andreas Tille <tille@debian.org> wrote:
>> Hi Peter,
>>
>> On Thu, Apr 05, 2018 at 04:19:50PM +0100, Peter Cock wrote:
>>>
>>> https://github.com/biopython/biopython/commit/6421d365a511c0de71748737ba6e1cd8518658ac
>>>
>>> Can you pull in that commit as a patch for the Biopython 1.71 package?
>>
>> Thanks.  I'm using this as patch.  I can confirm that this works now
>> (I'm using the other patch suggested here[1] in addition to deal with
>> potential other encoding issues.
>>
>> I'll upload soon (I had some other issues with the packaging which are
>> not related).
>>
>> Kind regards
>>
>>     Andreas.
>>
>>
>> [1] https://lists.debian.org/debian-python/2018/04/msg00023.html
>>
>> --
>> http://fam-tille.de

Thread

Strange encoding problem in setup.py of biopython 1.71 Andreas Tille <andreas@an3as.eu> - 2018-04-05 16:20 +0200
  Re: Strange encoding problem in setup.py of biopython 1.71 Piotr Ożarowski <piotr@debian.org> - 2018-04-05 16:40 +0200
  Re: Strange encoding problem in setup.py of biopython 1.71 Andreas Tille <andreas@an3as.eu> - 2018-04-05 16:40 +0200
    Re: Strange encoding problem in setup.py of biopython 1.71 Klaus Zimmermann <klaus_zimmermann@gmx.de> - 2018-04-05 16:50 +0200
      Re: Strange encoding problem in setup.py of biopython 1.71 Peter Cock <p.j.a.cock@googlemail.com> - 2018-04-05 17:30 +0200
        Re: Strange encoding problem in setup.py of biopython 1.71 Andreas Tille <tille@debian.org> - 2018-04-06 09:20 +0200
          Re: Strange encoding problem in setup.py of biopython 1.71 Peter Cock <p.j.a.cock@googlemail.com> - 2018-04-06 11:40 +0200
            Re: Strange encoding problem in setup.py of biopython 1.71 Piotr Ożarowski <piotr@debian.org> - 2018-04-07 00:00 +0200
            Re: Strange encoding problem in setup.py of biopython 1.71 Peter Cock <p.j.a.cock@googlemail.com> - 2018-04-13 13:20 +0200
    Re: Strange encoding problem in setup.py of biopython 1.71 Olivier Sallou <olivier.sallou@irisa.fr> - 2018-04-05 16:50 +0200

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