Groups > linux.debian.maint.python > #9568

Problem backporting python-pyvcf

Path	csiph.com!feeder.erje.net!2.eu.feeder.erje.net!news2.arglkargh.de!news.mixmin.net!aioe.org!bofh.it!news.nic.it!robomod
From	Andreas Tille <andreas@an3as.eu>
Newsgroups	linux.debian.maint.python
Subject	Problem backporting python-pyvcf
Date	Fri, 16 Jun 2017 16:00:01 +0200
Message-ID	<tSZX3-Lj-3@gated-at.bofh.it> (permalink)
X-Original-To	debian-backports@lists.debian.org, debian-python@lists.debian.org
X-Mailbox-Line	From debian-python-request@lists.debian.org Fri Jun 16 13:54:57 2017
Old-Return-Path	<andreas@an3as.eu>
X-Amavis-Spam-Status	No, score=-7.001 tagged_above=-10000 required=5.3 tests=[BAYES_00=-2, LDO_WHITELIST=-5, RP_MATCHES_RCVD=-0.001] autolearn=ham autolearn_force=no
X-Policyd-Weight	using cached result; rate: -6.1
MIME-Version	1.0
Content-Type	text/plain; charset=us-ascii
Content-Disposition	inline
User-Agent	Mutt/1.5.23 (2014-03-12)
X-Mailing-List	<debian-python@lists.debian.org> archive/latest/14945
List-ID	<debian-python.lists.debian.org>
List-URL	<https://lists.debian.org/debian-python/>
List-Archive	https://lists.debian.org/msgid-search/20170616135442.GD22489@an3as.eu
Approved	robomod@news.nic.it
Lines	51
Organization	linux.* mail to news gateway
Sender	robomod@news.nic.it
X-Original-Cc	Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
X-Original-Date	Fri, 16 Jun 2017 15:54:42 +0200
X-Original-Message-ID	<20170616135442.GD22489@an3as.eu>
Xref	csiph.com linux.debian.maint.python:9568

Show key headers only | View raw

Hi,

I tried to upgrade the Jessie backport of python-pyvcf from
0.6.7-1~bpo8+1 to 0.6.8-1.  Unfortunately when trying to build this
minor update the build runs into lots of errors like:

...
creating build/temp.linux-amd64-2.7
creating build/temp.linux-amd64-2.7/vcf
x86_64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python2.7 -c vcf/cparse.c -o build/temp.linux-amd64-2.7/vcf/cparse.o
x86_64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -D_FORTIFY_SOURCE=2 -g -fstack-protector-strong -Wformat -Werror=format-security -fPIE -pie -Wl,-z,relro -Wl,-z,now -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 build/temp.linux-amd64-2.7/vcf/cparse.o -o /build/python-pyvcf-0.6.8/.pybuild/pythonX.Y_2.7/build/vcf/cparse.so
/usr/lib/gcc/x86_64-linux-gnu/4.9/../../../x86_64-linux-gnu/Scrt1.o: In function `_start':
(.text+0x20): undefined reference to `main'
build/temp.linux-amd64-2.7/vcf/cparse.o: In function `__Pyx_PyFunction_FastCallNoKw':
/build/python-pyvcf-0.6.8/vcf/cparse.c:2681: undefined reference to `_PyThreadState_Current'
/build/python-pyvcf-0.6.8/vcf/cparse.c:2691: undefined reference to `PyFrame_New'
/build/python-pyvcf-0.6.8/vcf/cparse.c:2700: undefined reference to `PyEval_EvalFrameEx'
build/temp.linux-amd64-2.7/vcf/cparse.o: In function `__Pyx_AddTraceback':
/build/python-pyvcf-0.6.8/vcf/cparse.c:3732: undefined reference to `_PyThreadState_Current'
/build/python-pyvcf-0.6.8/vcf/cparse.c:3732: undefined reference to `PyFrame_New'
/build/python-pyvcf-0.6.8/vcf/cparse.c:3740: undefined reference to `PyTraceBack_Here'
build/temp.linux-amd64-2.7/vcf/cparse.o: In function `__Pyx_CreateCodeObjectForTraceback':
/build/python-pyvcf-0.6.8/vcf/cparse.c:3676: undefined reference to `PyString_FromString'
/build/python-pyvcf-0.6.8/vcf/cparse.c:3683: undefined reference to `PyString_FromFormat'
/build/python-pyvcf-0.6.8/vcf/cparse.c:3676: undefined reference to `PyString_FromString'
/build/python-pyvcf-0.6.8/vcf/cparse.c:3690: undefined reference to `PyString_FromString'
/build/python-pyvcf-0.6.8/vcf/cparse.c:3696: undefined reference to `PyCode_New'
build/temp.linux-amd64-2.7/vcf/cparse.o: In function `__pyx_insert_code_object':
/build/python-pyvcf-0.6.8/vcf/cparse.c:3648: undefined reference to `PyMem_Realloc'
/build/python-pyvcf-0.6.8/vcf/cparse.c:3628: undefined reference to `PyMem_Malloc'
build/temp.linux-amd64-2.7/vcf/cparse.o: In function `__Pyx_RaiseArgtupleInvalid':
/build/python-pyvcf-0.6.8/vcf/cparse.c:2899: undefined reference to `PyExc_TypeError'
/build/python-pyvcf-0.6.8/vcf/cparse.c:2899: undefined reference to `PyErr_Format'
build/temp.linux-amd64-2.7/vcf/cparse.o: In function `__Pyx_SetItemInt_Fast':
/build/python-pyvcf-0.6.8/vcf/cparse.c:3296: undefined reference to `PyInt_FromSsize_t'
build/temp.linux-amd64-2.7/vcf/cparse.o: In function `__Pyx_SetItemInt_Generic':
/build/python-pyvcf-0.6.8/vcf/cparse.c:3255: undefined reference to `PyObject_SetItem'
build/temp.linux-amd64-2.7/vcf/cparse.o: In function `__Pyx_PyFunction_FastCallDict':
...


and so on (errors are continuing).  Does anybody have an idea what might
went wrong here under Jessie which builds nicely under Stretch or should
I post a full build log?

Kind regards

      Andreas.

-- 
http://fam-tille.de

Back to linux.debian.maint.python | Previous | Next — Next in thread | Find similar | Unroll thread

Thread

Problem backporting python-pyvcf Andreas Tille <andreas@an3as.eu> - 2017-06-16 16:00 +0200
  Re: Problem backporting python-pyvcf Graham Inggs <ginggs@debian.org> - 2017-06-16 17:50 +0200

csiph-web