Path: csiph.com!feeder.erje.net!2.eu.feeder.erje.net!news2.arglkargh.de!news.mixmin.net!aioe.org!bofh.it!news.nic.it!robomod From: Andreas Tille Newsgroups: linux.debian.maint.python Subject: Problem backporting python-pyvcf Date: Fri, 16 Jun 2017 16:00:01 +0200 Message-ID: X-Original-To: debian-backports@lists.debian.org, debian-python@lists.debian.org X-Mailbox-Line: From debian-python-request@lists.debian.org Fri Jun 16 13:54:57 2017 Old-Return-Path: X-Amavis-Spam-Status: No, score=-7.001 tagged_above=-10000 required=5.3 tests=[BAYES_00=-2, LDO_WHITELIST=-5, RP_MATCHES_RCVD=-0.001] autolearn=ham autolearn_force=no X-Policyd-Weight: using cached result; rate: -6.1 MIME-Version: 1.0 Content-Type: text/plain; charset=us-ascii Content-Disposition: inline User-Agent: Mutt/1.5.23 (2014-03-12) X-Mailing-List: archive/latest/14945 List-ID: List-URL: List-Archive: https://lists.debian.org/msgid-search/20170616135442.GD22489@an3as.eu Approved: robomod@news.nic.it Lines: 51 Organization: linux.* mail to news gateway Sender: robomod@news.nic.it X-Original-Cc: Debian Med Packaging Team X-Original-Date: Fri, 16 Jun 2017 15:54:42 +0200 X-Original-Message-ID: <20170616135442.GD22489@an3as.eu> Xref: csiph.com linux.debian.maint.python:9568 Hi, I tried to upgrade the Jessie backport of python-pyvcf from 0.6.7-1~bpo8+1 to 0.6.8-1. Unfortunately when trying to build this minor update the build runs into lots of errors like: ... creating build/temp.linux-amd64-2.7 creating build/temp.linux-amd64-2.7/vcf x86_64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python2.7 -c vcf/cparse.c -o build/temp.linux-amd64-2.7/vcf/cparse.o x86_64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -D_FORTIFY_SOURCE=2 -g -fstack-protector-strong -Wformat -Werror=format-security -fPIE -pie -Wl,-z,relro -Wl,-z,now -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 build/temp.linux-amd64-2.7/vcf/cparse.o -o /build/python-pyvcf-0.6.8/.pybuild/pythonX.Y_2.7/build/vcf/cparse.so /usr/lib/gcc/x86_64-linux-gnu/4.9/../../../x86_64-linux-gnu/Scrt1.o: In function `_start': (.text+0x20): undefined reference to `main' build/temp.linux-amd64-2.7/vcf/cparse.o: In function `__Pyx_PyFunction_FastCallNoKw': /build/python-pyvcf-0.6.8/vcf/cparse.c:2681: undefined reference to `_PyThreadState_Current' /build/python-pyvcf-0.6.8/vcf/cparse.c:2691: undefined reference to `PyFrame_New' /build/python-pyvcf-0.6.8/vcf/cparse.c:2700: undefined reference to `PyEval_EvalFrameEx' build/temp.linux-amd64-2.7/vcf/cparse.o: In function `__Pyx_AddTraceback': /build/python-pyvcf-0.6.8/vcf/cparse.c:3732: undefined reference to `_PyThreadState_Current' /build/python-pyvcf-0.6.8/vcf/cparse.c:3732: undefined reference to `PyFrame_New' /build/python-pyvcf-0.6.8/vcf/cparse.c:3740: undefined reference to `PyTraceBack_Here' build/temp.linux-amd64-2.7/vcf/cparse.o: In function `__Pyx_CreateCodeObjectForTraceback': /build/python-pyvcf-0.6.8/vcf/cparse.c:3676: undefined reference to `PyString_FromString' /build/python-pyvcf-0.6.8/vcf/cparse.c:3683: undefined reference to `PyString_FromFormat' /build/python-pyvcf-0.6.8/vcf/cparse.c:3676: undefined reference to `PyString_FromString' /build/python-pyvcf-0.6.8/vcf/cparse.c:3690: undefined reference to `PyString_FromString' /build/python-pyvcf-0.6.8/vcf/cparse.c:3696: undefined reference to `PyCode_New' build/temp.linux-amd64-2.7/vcf/cparse.o: In function `__pyx_insert_code_object': /build/python-pyvcf-0.6.8/vcf/cparse.c:3648: undefined reference to `PyMem_Realloc' /build/python-pyvcf-0.6.8/vcf/cparse.c:3628: undefined reference to `PyMem_Malloc' build/temp.linux-amd64-2.7/vcf/cparse.o: In function `__Pyx_RaiseArgtupleInvalid': /build/python-pyvcf-0.6.8/vcf/cparse.c:2899: undefined reference to `PyExc_TypeError' /build/python-pyvcf-0.6.8/vcf/cparse.c:2899: undefined reference to `PyErr_Format' build/temp.linux-amd64-2.7/vcf/cparse.o: In function `__Pyx_SetItemInt_Fast': /build/python-pyvcf-0.6.8/vcf/cparse.c:3296: undefined reference to `PyInt_FromSsize_t' build/temp.linux-amd64-2.7/vcf/cparse.o: In function `__Pyx_SetItemInt_Generic': /build/python-pyvcf-0.6.8/vcf/cparse.c:3255: undefined reference to `PyObject_SetItem' build/temp.linux-amd64-2.7/vcf/cparse.o: In function `__Pyx_PyFunction_FastCallDict': ... and so on (errors are continuing). Does anybody have an idea what might went wrong here under Jessie which builds nicely under Stretch or should I post a full build log? Kind regards Andreas. -- http://fam-tille.de