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Bug#991919: transition: r-api-bioc-3.13

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On 9/11/21 12:27 PM, Andreas Tille wrote:
> Hi,
> 
> the blockers mentioned below are done now.  Those who have some
> spare time might like to continue with the transition.  I will
> not contribute relevant things until Tuesday.

I did few uploads to get the transition moving forward. Current blocker is
for r-bioc-biocsingular which needs r-bioc-scaledmatrix and the latter is still in NEW.
For scaledmatrix, I've asked already on the #-ftp IRC as well, hopefully it gets proc soon.

This is blocking a few packages, but I'm in the process of uploading the rest which are not directly uploaded.
Will upload a few packages tomorrow as well.

> There is one thing I would love to be solved soon:  I just cheated
> with the test suite of biomformat in this patch:
> 
>    https://salsa.debian.org/r-pkg-team/r-bioc-biomformat/-/blob/master/debian/patches/fixme_disable_test_for_the_moment.patch

Looking at the error, and also at the calls for those, they are called with `suppressWarnings(read_biom(min_sparse_hdf5))`
So probably the file was not good already, since it explicitly tries to suppress warnings.
_*Maybe*_ in this release, there were a few changes that rendered the file unusable to for analysis.
To me, it does not appear high priority.

> I would love if somebody could find a fix - may be by discussing
> with upstream.

No time, sorry :)

Cheers,

-- 
Nilesh Patra

Debian Developer, Uploading
  ⢀⣴⠾⠻⢶⣦⠀
  ⣾⠁⢠⠒⠀⣿⡁  
  ⢿⡄⠘⠷⠚⠋   nilesh@debian.org / nileshpatra.info / tchncs.de
  ⠈⠳⣄

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Bug#991919: transition: r-api-bioc-3.13 Andreas Tille <tille@debian.org> - 2021-09-08 16:20 +0200
  Bug#991919: transition: r-api-bioc-3.13 Andreas Tille <andreas@an3as.eu> - 2021-09-11 09:10 +0200
    Bug#991919: transition: r-api-bioc-3.13 Nilesh Patra <nilesh@nileshpatra.info> - 2021-09-11 20:00 +0200
      Bug#991919: transition: r-api-bioc-3.13 Andreas Tille <andreas@an3as.eu> - 2021-09-12 08:30 +0200

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