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Groups > linux.debian.bugs.dist > #1069424
| From | Paul Gevers <elbrus@debian.org> |
|---|---|
| Newsgroups | linux.debian.bugs.dist, linux.debian.devel.release |
| Subject | Bug#991919: List of all packages in BioConductor transition dependency level 1 failing due issue with either RUnit or testthat |
| Date | 2021-09-02 15:10 +0200 |
| Message-ID | <CSUDD-7JD-1@gated-at.bofh.it> (permalink) |
| References | <CILii-3Fz-3@gated-at.bofh.it> <CSTRf-7bI-5@gated-at.bofh.it> <CILii-3Fz-3@gated-at.bofh.it> <CSTRf-7bI-5@gated-at.bofh.it> |
| Organization | linux.* mail to news gateway |
Cross-posted to 2 groups.
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Hi Andreas,
On 02-09-2021 13:12, Andreas Tille wrote:
> I did added an info about all those packages of level 1 that are failing
> either due to RUnit or testthat issues and here is a manually edited
> `grep -A8 '/jobs/' r-bioc-*/debian/changelog` on my local disk:
>
> r-bioc-biocparallel/debian/changelog: TODO: https://salsa.debian.org/r-pkg-team/r-bioc-biocparallel/-/jobs/1898498
> r-bioc-biocparallel/debian/changelog- > BiocGenerics:::testPackage("BiocParallel")
> r-bioc-biocparallel/debian/changelog- Error in library("RUnit", quietly = TRUE) :
> r-bioc-biocparallel/debian/changelog- there is no package called ‘RUnit’
> r-bioc-biocparallel/debian/changelog- Calls: <Anonymous> -> library
> r-bioc-biocparallel/debian/changelog- Execution halted
I only checked this one.
> The packages in question are mentioned as Test-Depends and I have no
> idea why these are not found.
No, it's the autodep8 one that fails, not the one mentioned in
d/t/control. I don't recall of the top of my head how you can enhance
autodep8, but $(man autodep8) should come to the rescue.
Paul
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Bug#991919: transition: r-api-bioc-3.13 Dylan Aïssi <daissi@debian.org> - 2021-08-05 15:10 +0200
Bug#991919: Bioconductor API Bump to 3.13 Andreas Tille <tille@debian.org> - 2021-08-15 13:30 +0200
Bug#991919: Bioconductor API Bump to 3.13 Andreas Tille <tille@debian.org> - 2021-08-26 07:50 +0200
Bug#991919: Bioconductor API Bump to 3.13 Paul Gevers <elbrus@debian.org> - 2021-08-26 10:00 +0200
Bug#991919: Bioconductor API Bump to 3.13 Dylan Aïssi <daissi@debian.org> - 2021-08-26 11:10 +0200
Bug#991919: Bioconductor API Bump to 3.13 Andreas Tille <tille@debian.org> - 2021-08-26 13:10 +0200
Bug#991919: Bioconductor API Bump to 3.13 Sebastian Ramacher <sramacher@debian.org> - 2021-08-30 10:10 +0200
Bug#991919: transition: r-api-bioc-3.13 Sebastian Ramacher <sramacher@debian.org> - 2021-08-23 21:00 +0200
Bug#991919: List of all packages in BioConductor transition dependency level 1 failing due issue with either RUnit or testthat Andreas Tille <andreas@an3as.eu> - 2021-09-02 14:20 +0200
Bug#991919: List of all packages in BioConductor transition dependency level 1 failing due issue with either RUnit or testthat Paul Gevers <elbrus@debian.org> - 2021-09-02 15:10 +0200
Bug#991919: Solved, but remaining issue with r-bioc-tximport (Was: List of all packages in BioConductor transition dependency level 1 failing due issue with either RUnit or testthat) Andreas Tille <andreas@an3as.eu> - 2021-09-03 10:10 +0200
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