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Groups > linux.debian.bugs.dist > #1069421
| From | Andreas Tille <andreas@an3as.eu> |
|---|---|
| Newsgroups | linux.debian.bugs.dist, linux.debian.devel.release |
| Subject | Bug#991919: List of all packages in BioConductor transition dependency level 1 failing due issue with either RUnit or testthat |
| Date | 2021-09-02 14:20 +0200 |
| Message-ID | <CSTRf-7bI-5@gated-at.bofh.it> (permalink) |
| References | <CILii-3Fz-3@gated-at.bofh.it> |
| Organization | linux.* mail to news gateway |
Cross-posted to 2 groups.
Hi,
I did added an info about all those packages of level 1 that are failing
either due to RUnit or testthat issues and here is a manually edited
`grep -A8 '/jobs/' r-bioc-*/debian/changelog` on my local disk:
r-bioc-biocparallel/debian/changelog: TODO: https://salsa.debian.org/r-pkg-team/r-bioc-biocparallel/-/jobs/1898498
r-bioc-biocparallel/debian/changelog- > BiocGenerics:::testPackage("BiocParallel")
r-bioc-biocparallel/debian/changelog- Error in library("RUnit", quietly = TRUE) :
r-bioc-biocparallel/debian/changelog- there is no package called ‘RUnit’
r-bioc-biocparallel/debian/changelog- Calls: <Anonymous> -> library
r-bioc-biocparallel/debian/changelog- Execution halted
--
r-bioc-lpsymphony/debian/changelog: TODO: https://salsa.debian.org/r-pkg-team/r-bioc-lpsymphony/-/jobs/1901441
r-bioc-lpsymphony/debian/changelog- > library(testthat)
r-bioc-lpsymphony/debian/changelog- Error in library(testthat) : there is no package called ‘testthat’
r-bioc-lpsymphony/debian/changelog- Execution halted
--
r-bioc-matrixgenerics/debian/changelog: https://salsa.debian.org/r-pkg-team/r-bioc-matrixgenerics/-/jobs/1901420
r-bioc-matrixgenerics/debian/changelog- > library(testthat)
r-bioc-matrixgenerics/debian/changelog- Error in library(testthat) : there is no package called ‘testthat’
r-bioc-matrixgenerics/debian/changelog- Execution halted
--
r-bioc-protgenerics/debian/changelog: TODO: https://salsa.debian.org/r-pkg-team/r-bioc-protgenerics/-/jobs/1902072
r-bioc-protgenerics/debian/changelog- > library("testthat")
r-bioc-protgenerics/debian/changelog- Error in library("testthat") : there is no package called ‘testthat’
r-bioc-protgenerics/debian/changelog- Execution halted
--
r-bioc-s4vectors/debian/changelog: TODO: https://salsa.debian.org/r-pkg-team/r-bioc-s4vectors/-/jobs/1897207
r-bioc-s4vectors/debian/changelog- > S4Vectors:::.test()
r-bioc-s4vectors/debian/changelog- Error in library("RUnit", quietly = TRUE) :
r-bioc-s4vectors/debian/changelog- there is no package called ‘RUnit’
r-bioc-s4vectors/debian/changelog- Calls: <Anonymous> -> <Anonymous> -> library
r-bioc-s4vectors/debian/changelog- Execution halted
--
r-bioc-seqlogo/debian/changelog: TODO: https://salsa.debian.org/r-pkg-team/r-bioc-seqlogo/-/jobs/1898537
r-bioc-seqlogo/debian/changelog- > library(testthat)
r-bioc-seqlogo/debian/changelog- Error in library(testthat) : there is no package called ‘testthat’
r-bioc-seqlogo/debian/changelog- Execution halted
--
r-bioc-tximport/debian/changelog: TODO: https://salsa.debian.org/r-pkg-team/r-bioc-tximport/-/jobs/1902367
r-bioc-tximport/debian/changelog- strangely enough it had
r-bioc-tximport/debian/changelog- > skip_if_not_installed("tximportData")
r-bioc-tximport/debian/changelog- Error: Reason: tximportData cannot be loaded
r-bioc-tximport/debian/changelog- Execution halted
r-bioc-tximport/debian/changelog- In my local build I get
r-bioc-tximport/debian/changelog- > library(testthat)
r-bioc-tximport/debian/changelog- Error in library(testthat) : there is no package called ‘testthat’
The packages in question are mentioned as Test-Depends and I have no
idea why these are not found.
The transition is effectively blocked by these issues and any ideas are
really welcome.
Kind regards
Andreas.
--
http://fam-tille.de
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Bug#991919: transition: r-api-bioc-3.13 Dylan Aïssi <daissi@debian.org> - 2021-08-05 15:10 +0200
Bug#991919: Bioconductor API Bump to 3.13 Andreas Tille <tille@debian.org> - 2021-08-15 13:30 +0200
Bug#991919: Bioconductor API Bump to 3.13 Andreas Tille <tille@debian.org> - 2021-08-26 07:50 +0200
Bug#991919: Bioconductor API Bump to 3.13 Paul Gevers <elbrus@debian.org> - 2021-08-26 10:00 +0200
Bug#991919: Bioconductor API Bump to 3.13 Dylan Aïssi <daissi@debian.org> - 2021-08-26 11:10 +0200
Bug#991919: Bioconductor API Bump to 3.13 Andreas Tille <tille@debian.org> - 2021-08-26 13:10 +0200
Bug#991919: Bioconductor API Bump to 3.13 Sebastian Ramacher <sramacher@debian.org> - 2021-08-30 10:10 +0200
Bug#991919: transition: r-api-bioc-3.13 Sebastian Ramacher <sramacher@debian.org> - 2021-08-23 21:00 +0200
Bug#991919: List of all packages in BioConductor transition dependency level 1 failing due issue with either RUnit or testthat Andreas Tille <andreas@an3as.eu> - 2021-09-02 14:20 +0200
Bug#991919: List of all packages in BioConductor transition dependency level 1 failing due issue with either RUnit or testthat Paul Gevers <elbrus@debian.org> - 2021-09-02 15:10 +0200
Bug#991919: Solved, but remaining issue with r-bioc-tximport (Was: List of all packages in BioConductor transition dependency level 1 failing due issue with either RUnit or testthat) Andreas Tille <andreas@an3as.eu> - 2021-09-03 10:10 +0200
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