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Bug#1100261: python-anndata: FTBFS: E AttributeError: module 'zarr' has no attribute 'DirectoryStore'

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Package: src:python-anndata
Version: 0.10.6-1
Severity: serious
Tags: ftbfs trixie sid

Dear maintainer:

During a rebuild of all packages in unstable, your package failed to build:

--------------------------------------------------------------------------------
[...]
 debian/rules clean
dh clean --buildsystem=pybuild
   dh_auto_clean -O--buildsystem=pybuild
   dh_autoreconf_clean -O--buildsystem=pybuild
   dh_clean -O--buildsystem=pybuild
 debian/rules binary
dh binary --buildsystem=pybuild
   dh_update_autotools_config -O--buildsystem=pybuild
   dh_autoreconf -O--buildsystem=pybuild
   dh_auto_configure -O--buildsystem=pybuild
   dh_auto_build -O--buildsystem=pybuild
I: pybuild plugin_pyproject:129: Building wheel for python3.13 with "build" module
I: pybuild base:311: python3.13 -m build --skip-dependency-check --no-isolation --wheel --outdir /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_anndata  
* Building wheel...
Successfully built anndata-0.10.6-py3-none-any.whl
I: pybuild plugin_pyproject:144: Unpacking wheel built for python3.13 with "installer" module
   dh_auto_test -O--buildsystem=pybuild
I: pybuild base:311: cd /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_anndata/build; python3.13 -m pytest -v
ImportError while loading conftest '/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_anndata/build/anndata/tests/conftest.py'.
anndata/tests/conftest.py:8: in <module>
    from anndata.tests.helpers import subset_func  # noqa: F401
anndata/tests/helpers.py:769: in <module>
    class AccessTrackingStore(zarr.DirectoryStore):
E   AttributeError: module 'zarr' has no attribute 'DirectoryStore'
E: pybuild pybuild:389: test: plugin pyproject failed with: exit code=4: cd /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_anndata/build; python3.13 -m pytest -v
dh_auto_test: error: pybuild --test --test-pytest -i python{version} -p 3.13 returned exit code 13
make: *** [debian/rules:10: binary] Error 25
dpkg-buildpackage: error: debian/rules binary subprocess returned exit status 2
--------------------------------------------------------------------------------

The above is just how the build ends and not necessarily the most relevant part.
If required, the full build log is available here:

https://people.debian.org/~sanvila/build-logs/202503/

About the archive rebuild: The build was made on virtual machines from AWS,
using sbuild and a reduced chroot with only build-essential packages.

If you could not reproduce the bug please contact me privately, as I
am willing to provide ssh access to a virtual machine where the bug is
fully reproducible.

If this is really a bug in one of the build-depends, please use
reassign and add an affects on src:python-anndata, so that this is still
visible in the BTS web page for this package.

Thanks.

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Bug#1100261: python-anndata: FTBFS: E   AttributeError: module 'zarr' has no attribute 'DirectoryStore' Santiago Vila <sanvila@debian.org> - 2025-03-12 17:40 +0100

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