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Bug#1103199: [R-pkg-team] Bug#1103199: [PATCH] Fix for FTBFS with R 4.5.0

From Charles Plessy <plessy@debian.org>
Newsgroups linux.debian.bugs.rc
Subject Bug#1103199: [R-pkg-team] Bug#1103199: [PATCH] Fix for FTBFS with R 4.5.0
Date 2025-04-16 10:30 +0200
Message-ID <KC6jD-dTMU-1@gated-at.bofh.it> (permalink)
References <KBClA-dzWg-25@gated-at.bofh.it> <KC5xf-dTen-3@gated-at.bofh.it> <KBClA-dzWg-25@gated-at.bofh.it> <KC5xf-dTen-3@gated-at.bofh.it>
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Thanks again liwenjun for the patch,

I just had a look at the upstream GitHub repository and it is probably fixed there.

https://github.com/benilton/oligo/commits/devel/

Instead of carrying a patch, I would like to propose to upgrade to the new upstream version that will be released very soon.

https://www.bioconductor.org/developers/release-schedule/

Have a nice day,

Charles

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Bug#1103199: r-bioc-oligo: FTBFS: ParserGzXYS.c:62:11: error: implicit declaration of function 'Calloc'; did you mean 'calloc'? [-Wimplicit-function-declaration] Santiago Vila <sanvila@debian.org> - 2025-04-15 02:30 +0200
  Bug#1103199: [R-pkg-team] Bug#1103199: [PATCH] Fix for FTBFS with R 4.5.0 Charles Plessy <plessy@debian.org> - 2025-04-16 10:30 +0200
  Bug#1103199: marked as pending in r-bioc-oligo Andreas Tille <tille@debian.org> - 2025-04-24 14:40 +0200
  Bug#1103199: marked as pending in r-bioc-oligo Andreas Tille <tille@debian.org> - 2025-04-24 14:40 +0200
  Processed: Bug#1103199 marked as pending in r-bioc-oligo "Debian Bug Tracking System" <owner@bugs.debian.org> - 2025-04-24 14:40 +0200
  Processed: Bug#1103199 marked as pending in r-bioc-oligo "Debian Bug Tracking System" <owner@bugs.debian.org> - 2025-04-24 14:40 +0200
  Bug#1103199: marked as done (r-bioc-oligo: FTBFS: ParserGzXYS.c:62:11:  error: implicit declaration of function 'Calloc'; did you mean 'calloc'?  [-Wimplicit-function-declaration]) "Debian Bug Tracking System" <owner@bugs.debian.org> - 2025-04-24 15:10 +0200

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