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Groups > linux.debian.bugs.dist > #1153980

Bug#1040953: bookworm-pu: package sra-sdk/3.0.3+dfsg-6~deb12u1

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Package: release.debian.org
Severity: normal
Tags: bookworm
User: release.debian.org@packages.debian.org
Usertags: pu
X-Debbugs-Cc: sra-sdk@packages.debian.org
Control: affects -1 + src:sra-sdk

[ Reason ]
Per #1039621, the new libngs-jni package accidentally wound up with
bad content (unexpanded variables in the key symlink's source *and*
target) that rendered it useless.

[ Impact ]
This package's reverse dependencies, from libngs-java on up, will be
broken unless libncbi-ngs-dev happens to be installed.

[ Tests ]
Various affected packages have autopkgtests, but they evidently missed
the relevant bug, having presumably wound up running with
libncbi-ngs-dev additionally installed.  (The tests did catch the
need for architecture restrictions that made it into bookworm, FWIW.)

[ Risks ]
Minimal -- trivial fix, working in testing and unstable with no
further changes from stable.

[ Checklist ]
  [*] *all* changes are documented in the d/changelog
  [v] I reviewed all changes and I approve them
  [v] attach debdiff against the package in (old)stable
  [v] the issue is verified as fixed in unstable

[ Changes ]
Tweak debian/rules to make the necessary substitutions in
libngs-java.links.in.

[ Other info ]
In reviewing the debdiff, I see that one of my teammates pushed a
debian/salsa-ci.yml update without a corresponding changelog note that
consequently slipped into -6 undocumented; what should I do about it
at this point?

I've held off on cleaning up a long-dangling symlink in a different
binary package (sra-toolkit, #1040391) but can readily throw that in
if you'd like.

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Thread

Bug#1040953: bookworm-pu: package sra-sdk/3.0.3+dfsg-6~deb12u1 "Aaron M. Ucko" <ucko@debian.org> - 2023-07-13 05:00 +0200
  Bug#1040953: bookworm-pu: package sra-sdk/3.0.3+dfsg-6~deb12u1 "Adam D. Barratt" <adam@adam-barratt.org.uk> - 2023-07-13 20:00 +0200
    Bug#1040953: bookworm-pu: package sra-sdk/3.0.3+dfsg-6~deb12u1 ucko@debian.org (Aaron M. Ucko) - 2023-07-13 20:20 +0200
      Bug#1040953: bookworm-pu: package sra-sdk/3.0.3+dfsg-6~deb12u1 ucko@debian.org (Aaron M. Ucko) - 2023-07-14 05:30 +0200
        Bug#1040953: bookworm-pu: package sra-sdk/3.0.3+dfsg-6~deb12u1 "Adam D. Barratt" <adam@adam-barratt.org.uk> - 2023-07-14 18:00 +0200
          Bug#1040953: bookworm-pu: package sra-sdk/3.0.3+dfsg-6~deb12u1 ucko@debian.org (Aaron M. Ucko) - 2023-07-14 21:20 +0200
            Bug#1040953: bookworm-pu: package sra-sdk/3.0.3+dfsg-6~deb12u1 "Adam D. Barratt" <adam@adam-barratt.org.uk> - 2023-07-14 21:30 +0200
  Bug#1040953: sra-sdk 3.0.3+dfsg-6~deb12u1 flagged for acceptance Adam D Barratt <adam@adam-barratt.org.uk> - 2023-07-15 14:40 +0200

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