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Groups > linux.debian.bugs.dist > #1101976
| From | Andreas Tille <tille@debian.org> |
|---|---|
| Newsgroups | linux.debian.bugs.dist, linux.debian.devel.release |
| Subject | Bug#1010422: transition: r-api-bioc-3.15 |
| Date | 2022-05-02 08:30 +0200 |
| Message-ID | <EixJf-cDcA-3@gated-at.bofh.it> (permalink) |
| References | <Eienf-cpGm-9@gated-at.bofh.it> <EivHr-cBOz-7@gated-at.bofh.it> <Eienf-cpGm-9@gated-at.bofh.it> <EivHr-cBOz-7@gated-at.bofh.it> |
| Organization | linux.* mail to news gateway |
Cross-posted to 2 groups.
Am Mon, May 02, 2022 at 09:39:25AM +0530 schrieb Nilesh Patra:
> On Sun, 1 May 2022 11:42:07 +0200 =?UTF-8?B?RHlsYW4gQcOvc3Np?= <daissi@debian.org> wrote:
> > Hi,
> > Bioconductor 3.15 has been released [1].
>
> Please hold this off until r-base migrates (which should be soon)
As far as I can see the testing migration is blocked by
∙ autopkgtest for r-cran-thematic/0.1.2.1-2: amd64: Pass, arm64: Regression ♻ (reference ♻), armhf: Pass, i386: Pass, ppc64el: Pass, s390x: Pass
where the autopkgtest log[1] says:
...
══ Failed tests ════════════════════════════════════════════════════════════════
── Error (test-base.R:9:3): base baselines ─────────────────────────────────────
Error in `svglite_(filename, bg, width, height, pointsize, standalone,
always_valid)`: Graphics API version mismatch
Backtrace:
▆
1. └─thematic:::expect_doppelganger(...) at test-base.R:9:2
2. └─vdiffr::expect_doppelganger(name, p, ...) at tests/testthat/helper-vdiffr.R:12:2
3. └─vdiffr writer(fig, testcase, title)
4. └─vdiffr:::svglite(file)
5. └─vdiffr:::svglite_(...)
── Error (test-ggplot.R:31:3): ggplot baselines ────────────────────────────────
Error in `svglite_(filename, bg, width, height, pointsize, standalone,
always_valid)`: Graphics API version mismatch
Backtrace:
▆
1. └─thematic:::expect_doppelganger(...) at test-ggplot.R:31:2
2. └─vdiffr::expect_doppelganger(name, p, ...) at tests/testthat/helper-vdiffr.R:12:2
3. └─vdiffr writer(fig, testcase, title)
4. └─vdiffr:::svglite(file)
5. └─vdiffr:::svglite_(...)
── Error (test-ggplot.R:149:3): Scale defaults can be overridden ───────────────
Error in `svglite_(filename, bg, width, height, pointsize, standalone,
always_valid)`: Graphics API version mismatch
...
Isn't this the just discussed Graphics API issue?
I guess your recent upload of 0.1.2.1-3 is supposed to fix this and
is intended to enable the migration, right?
Kind regards
Andreas.
[1] https://ci.debian.net/data/autopkgtest/testing/arm64/r/r-cran-thematic/21293099/log.gz
--
http://fam-tille.de
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Bug#1010422: transition: r-api-bioc-3.15 Dylan Aïssi <daissi@debian.org> - 2022-05-01 11:50 +0200
Bug#1010422: transition: r-api-bioc-3.15 Nilesh Patra <nilesh@debian.org> - 2022-05-02 06:20 +0200
Bug#1010422: transition: r-api-bioc-3.15 Andreas Tille <tille@debian.org> - 2022-05-02 08:30 +0200
Bug#1010422: transition: r-api-bioc-3.15 Nilesh Patra <nilesh@debian.org> - 2022-05-02 08:50 +0200
Bug#1010422: transition: r-api-bioc-3.15 Graham Inggs <ginggs@debian.org> - 2022-05-03 16:10 +0200
Bug#1010422: transition: r-api-bioc-3.15 Nilesh Patra <nilesh@debian.org> - 2022-05-03 16:10 +0200
Bug#1010422: transition: r-api-bioc-3.15 Nilesh Patra <nilesh@debian.org> - 2022-05-06 14:50 +0200
Bug#1010422: transition: r-api-bioc-3.15 Andreas Tille <tille@debian.org> - 2022-05-06 20:10 +0200
Bug#1010422: transition: r-api-bioc-3.15 Dylan Aïssi <daissi@debian.org> - 2022-05-11 10:40 +0200
Bug#1010422: transition: r-api-bioc-3.15 Nilesh Patra <nilesh@debian.org> - 2022-05-11 11:40 +0200
Bug#1010422: transition: r-api-bioc-3.15 Graham Inggs <ginggs@debian.org> - 2022-05-11 12:40 +0200
Bug#1011265: Britney fails to pin complete set in "Provides" api transitions [Was: Bug#1010422: transition: r-api-bioc-3.15] Paul Gevers <elbrus@debian.org> - 2022-05-19 09:50 +0200
Bug#1010422: Bug#1011265: Britney fails to pin complete set in "Provides" api transitions [Was: Bug#1010422: transition: r-api-bioc-3.15] Graham Inggs <ginggs@debian.org> - 2022-05-19 10:10 +0200
Bug#1010422: Bug#1011265: Britney fails to pin complete set in "Provides" api transitions [Was: Bug#1010422: transition: r-api-bioc-3.15] Nilesh Patra <nilesh@nileshpatra.info> - 2022-05-21 07:10 +0200
Bug#1010422: Bug#1011265: Britney fails to pin complete set in "Provides" api transitions [Was: Bug#1010422: transition: r-api-bioc-3.15] Graham Inggs <ginggs@debian.org> - 2022-05-21 12:20 +0200
Bug#1010422: Bug#1011265: Britney fails to pin complete set in "Provides" api transitions [Was: Bug#1010422: transition: r-api-bioc-3.15] Graham Inggs <ginggs@debian.org> - 2022-05-22 09:20 +0200
Bug#1010422: Bug#1011265: Britney fails to pin complete set in "Provides" api transitions [Was: Bug#1010422: transition: r-api-bioc-3.15] Andreas Tille <tille@debian.org> - 2022-05-22 15:40 +0200
Bug#1010422: Bug#1011265: Britney fails to pin complete set in "Provides" api transitions [Was: Bug#1010422: transition: r-api-bioc-3.15] Nilesh Patra <nilesh@nileshpatra.info> - 2022-05-22 16:20 +0200
Bug#1010422: Bug#1011265: Britney fails to pin complete set in "Provides" api transitions [Was: Bug#1010422: transition: r-api-bioc-3.15] Andreas Tille <andreas@an3as.eu> - 2022-05-22 22:40 +0200
Bug#1010422: Britney fails to pin complete set in "Provides" api transitions [Was: Bug#1010422: transition: r-api-bioc-3.15] Nilesh Patra <nilesh@debian.org> - 2022-05-19 10:20 +0200
Bug#1010422: Britney fails to pin complete set in "Provides" api transitions [Was: Bug#1010422: transition: r-api-bioc-3.15] Andreas Tille <tille@debian.org> - 2022-05-19 11:00 +0200
Bug#1010422: Britney fails to pin complete set in "Provides" api transitions [Was: Bug#1010422: transition: r-api-bioc-3.15] Paul Gevers <elbrus@debian.org> - 2022-05-19 13:10 +0200
Bug#1010422: Britney fails to pin complete set in "Provides" api transitions [Was: Bug#1010422: transition: r-api-bioc-3.15] Andreas Tille <tille@debian.org> - 2022-05-19 18:20 +0200
Bug#1010422: Britney fails to pin complete set in "Provides" api transitions [Was: Bug#1010422: transition: r-api-bioc-3.15] Nilesh Patra <nilesh@debian.org> - 2022-05-19 14:50 +0200
Bug#1010422: Britney fails to pin complete set in "Provides" api transitions [Was: Bug#1010422: transition: r-api-bioc-3.15] Andreas Tille <tille@debian.org> - 2022-05-19 11:00 +0200
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