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Groups > linux.debian.bugs.dist > #1019672
| From | Graham Inggs <ginggs@debian.org> |
|---|---|
| Newsgroups | linux.debian.bugs.dist |
| Subject | Bug#962553: gffread: autopkgtest needs update for new version of gff2aplot: warning on stderr |
| Date | 2020-07-29 10:10 +0200 |
| Message-ID | <AxPjX-5L2-3@gated-at.bofh.it> (permalink) |
| References | (4 earlier) <Apvip-2mV-1@gated-at.bofh.it> <AuXH4-76Y-5@gated-at.bofh.it> <Axc8V-7ct-1@gated-at.bofh.it> <AfSgh-5oL-9@gated-at.bofh.it> <Axc8V-7ct-1@gated-at.bofh.it> |
| Organization | linux.* mail to news gateway |
Control: reassign -1 src:gffread 0.11.8-1
Control: severity -1 serious
Control: tags -1 - moreinfo unreproducible
Hi
gff2aplot 2.0-13 migrated to testing and now causes gffread's
autopkgtests to fail there [1].
I'm reassigning this bug accordingly.
Please see the results of the recent migration-reference/0 run, dated
2020-07-28 18:10:16 UTC.
I've copied what I hope is the relevant part below.
Regards
Graham
[1] https://ci.debian.net/packages/g/gffread/testing/amd64/
/usr/share/trinityrnaseq/sample_data/test_Trinity_Assembly/__indiv_ex_sample_derived/ex05/isoform_pair.fasta.gmap.gff:
is okay.
/usr/share/spades/test_dataset/genes_1K.gff: is okay.
/usr/share/spades/test_dataset/operons_1K.gff: is okay.
autopkgtest [18:10:14]: test run-tests: -----------------------]
autopkgtest [18:10:14]: test run-tests: - - - - - - - - - - results -
- - - - - - - - -
run-tests FAIL stderr:
/tmp/autopkgtest-lxc.msyyr56h/downtmp/build.f2j/src/debian/tests/run-tests:
line 109: 8521 Segmentation fault gffread ${gff} > /dev/null
autopkgtest [18:10:14]: test run-tests: - - - - - - - - - - stderr -
- - - - - - - - -
/tmp/autopkgtest-lxc.msyyr56h/downtmp/build.f2j/src/debian/tests/run-tests:
line 109: 8521 Segmentation fault gffread ${gff} > /dev/null
/tmp/autopkgtest-lxc.msyyr56h/downtmp/build.f2j/src/debian/tests/run-tests:
line 109: 8523 Segmentation fault gffread ${gff} > /dev/null
autopkgtest [18:10:14]: @@@@@@@@@@@@@@@@@@@@ summary
run-tests FAIL stderr:
/tmp/autopkgtest-lxc.msyyr56h/downtmp/build.f2j/src/debian/tests/run-tests:
line 109: 8521 Segmentation fault gffread ${gff} > /dev/null
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Bug#962553: gffread: autopkgtest needs update for new version of gff2aplot: warning on stderr Graham Inggs <ginggs@debian.org> - 2020-06-17 17:40 +0200
Bug#962553: gffread: autopkgtest needs update for new version of gff2aplot: warning on stderr Adrian Bunk <bunk@debian.org> - 2020-07-05 19:10 +0200
Bug#962553: gffread: autopkgtest needs update for new version of gff2aplot: warning on stderr Graham Inggs <ginggs@debian.org> - 2020-07-06 01:10 +0200
Bug#962553: gffread: autopkgtest needs update for new version of gff2aplot: warning on stderr Pranav Ballaney <ballaneypranav@gmail.com> - 2020-07-27 16:20 +0200
Bug#962553: gffread: autopkgtest needs update for new version of gff2aplot: warning on stderr Graham Inggs <ginggs@debian.org> - 2020-07-29 10:10 +0200
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