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Help for issues with lazyarray needed

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  Help for issues with lazyarray needed Andreas Tille <andreas@an3as.eu> - 2020-03-05 09:50 +0100
    Re: Help for issues with lazyarray needed Andreas Tille <tille@debian.org> - 2020-03-05 19:10 +0100

#12348 — Help for issues with lazyarray needed

Control: tags -1 pending

Hi,

I have updated lazyarray in Git[1] (by moving it to Debian Science
team).  The old package was lagging way behind upstream and a Python3
port is available by upstream so I just create the python3-lazyarray
package fixing the open bugs.

Unfortunately there is an open issue[2].  Since the latest upstream
commit has only one failure (in contrast to the latest tagges upstream
version which is according to commit logs not really the latest) I
based the source tarball on the latest commit.  Unfortunately there
is one remaining issue for Python3.7 and two for Python3.8


   dh_auto_test -O--buildsystem=pybuild
I: pybuild base:217: cd /build/lazyarray-2.10.0+hg20170630.23ccca1/.pybuild/cpython3_3.7_lazyarray/build; python3.7 -m nose -v test
test.test_lazyarray.test_create_with_int ... ok
...
======================================================================
FAIL: test.test_lazyarray.test__issue4
----------------------------------------------------------------------
Traceback (most recent call last):
  File "/usr/lib/python3/dist-packages/nose/case.py", line 197, in runTest
    self.test(*self.arg)
  File "/build/lazyarray-2.10.0+hg20170630.23ccca1/.pybuild/cpython3_3.7_lazyarray/build/test/test_lazyarray.py", line 701, in test__issue4
    assert_equal(b[mask1].shape, partial_shape(mask1, b.shape), a[mask1].shape)
AssertionError: Tuples differ: (4, 1, 3) != (4,)

First tuple contains 2 additional elements.
First extra element 1:
1

- (4, 1, 3)
+ (4,) : (4, 1, 3)

----------------------------------------------------------------------
Ran 87 tests in 0.027s

FAILED (failures=1)



I continued manually in the pbuilder chroot to get Python3.8 issues:

pbuilder-chroot# cd /build/lazyarray-2.10.0+hg20170630.23ccca1/.pybuild/cpython3_3.8_lazyarray/build; python3.8 -m nose -v test
...
======================================================================
ERROR: test.support.testresult.get_test_runner_class
----------------------------------------------------------------------
Traceback (most recent call last):
  File "/usr/lib/python3/dist-packages/nose/case.py", line 197, in runTest
    self.test(*self.arg)
TypeError: get_test_runner_class() missing 1 required positional argument: 'verbosity'

======================================================================
ERROR: test.support.testresult.get_test_runner
----------------------------------------------------------------------
Traceback (most recent call last):
  File "/usr/lib/python3/dist-packages/nose/case.py", line 197, in runTest
    self.test(*self.arg)
TypeError: get_test_runner() missing 2 required positional arguments: 'stream' and 'verbosity'

----------------------------------------------------------------------
Ran 45 tests in 7.327s

FAILED (SKIP=1, errors=2)


I somehow suspect that the latter issue is not really hard and I wonder
whether I can get some help from DPMT?

My current plan is to ignore the test suite errors for the moment,
upload a Python3 enabled package to new queue.  Once it has passed new I
will see whether we found some solution for the said issues.  If not
I'll file a new RC bug to prevent testing migration.  I'd like to do
that means to get the latest version of pynn built to keep on with the
Python3 migration for this package.

Any help for the remaining issues is welcome.

Kind regards

      Andreas.

[1] https://salsa.debian.org/science-team/lazyarray
[2] https://bitbucket.org/apdavison/lazyarray/issues/6/test-failure

-- 
http://fam-tille.de

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#12349

On Thu, Mar 05, 2020 at 02:27:13PM +0530, Nilesh Patra wrote:
> 
> I had tried this,
> I think Passing [:-1] in the mask2 initialisation would fix this. We also
> need to cast this into a numpy array.
> ...
> 
> I'll try this by midnight today. If I can, I'll try a fix for this, and
> make a MR, or a patch.
> Would that work?

No need to work on this any more.  Upstream pointed me to Gitlab where
development is continued.  Status in Git is fine now.  Thanks a lot for
your attempt to help

     Andreas.

-- 
http://fam-tille.de

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