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Groups > linux.debian.maint.python > #12655 > unrolled thread
| Started by | Andreas Tille <andreas@an3as.eu> |
|---|---|
| First post | 2020-06-13 23:10 +0200 |
| Last post | 2020-06-14 00:50 +0200 |
| Articles | 2 — 2 participants |
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Help needed to run tests in biocore-ntnu-ncls Andreas Tille <andreas@an3as.eu> - 2020-06-13 23:10 +0200
Re: Help needed to run tests in biocore-ntnu-ncls Steffen Möller <steffen_moeller@gmx.de> - 2020-06-14 00:50 +0200
| From | Andreas Tille <andreas@an3as.eu> |
|---|---|
| Date | 2020-06-13 23:10 +0200 |
| Subject | Help needed to run tests in biocore-ntnu-ncls |
| Message-ID | <Ahlzz-2bT-5@gated-at.bofh.it> |
Hi DPMT,
Steffen Möller has prepared biocore-ntnu-ncls[1] in the Debian Med
COVID-19 effort. I did a review and realised that the build time test
does not work:
...
==================================== ERRORS ====================================
_____ ERROR collecting .pybuild/cpython3_3.8_ncls/build/tests/test_ncls.py _____
ImportError while importing test module '/build/biocore-ntnu-ncls-0.0+git20200225.f9894b0/.pybuild/cpython3_3.8_ncls/build/tests/test_ncls.py'.
Hint: make sure your test modules/packages have valid Python names.
Traceback:
tests/test_ncls.py:2: in <module>
from ncls import NCLS
../../../ncls/__init__.py:1: in <module>
from ncls.src.ncls import NCLS64
E ModuleNotFoundError: No module named 'ncls.src.ncls'
!!!!!!!!!!!!!!!!!!! Interrupted: 1 errors during collection !!!!!!!!!!!!!!!!!!!!
...
Any hint would be welcome.
Kind regards
Andreas.
[1] https://salsa.debian.org/med-team/biocore-ntnu-ncls
--
http://fam-tille.de
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| From | Steffen Möller <steffen_moeller@gmx.de> |
|---|---|
| Date | 2020-06-14 00:50 +0200 |
| Message-ID | <Ahn8m-2Y7-1@gated-at.bofh.it> |
| In reply to | #12655 |
Hi Andreas,
I think it is fine now.
=================================================================================
test session starts
=================================================================================
platform linux -- Python 3.8.3, pytest-4.6.9, py-1.8.1, pluggy-0.13.0
hypothesis profile 'default' ->
database=DirectoryBasedExampleDatabase('/home/moeller/git/med-team/biocore-ntnu-ncls/biocore-ntnu-ncls/.pybuild/cpython3_3.8_ncls/build/.hypothesis/exa
mples')
rootdir: /home/moeller/git/med-team/biocore-ntnu-ncls/biocore-ntnu-ncls
plugins: xonsh-0.9.14, cov-2.8.1, xdist-1.31.0, hypothesis-4.36.2,
mock-1.10.4, forked-1.1.3, arraydiff-0.3, timeout-1.3.3,
openfiles-0.4.0, remotedata-0.3.2, doctestplus-0.5.0
collected 2 items
tests/test_ncls.py
.. [100%]
==============================================================================
2 passed in 0.05 seconds
===============================================================================
I missed the dependency on cython. Let also me remove the generated
files from the upstream source tree and I'll then hand it back to you.
Many thanks!
Steffen
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