Groups > linux.debian.maint.python > #12160

Bug#936802: kmer: Python2 removal in sid/bullseye

From	Andreas Tille <andreas@an3as.eu>
Newsgroups	linux.debian.bugs.dist, linux.debian.maint.python
Subject	Bug#936802: kmer: Python2 removal in sid/bullseye
Date	2019-12-19 18:20 +0100
Message-ID	<zf7CW-7Tq-7@gated-at.bofh.it> (permalink)
References	<zf7CW-7Tq-9@gated-at.bofh.it>
Organization	linux.* mail to news gateway

Cross-posted to 2 groups.

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Hi,

I tried to convert kmer to Python3 in Git[1].  Unfortunately I'm stumbling
upon an issue in the test suite:

...
python3 /usr/bin/../lib/atac/bin/AtacDriver.py /tmp/atac-test.doxZJ4/results/work/LeprvsTuber.matches.extended

Traceback (most recent call last):
  File "/usr/bin/../lib/atac/bin/AtacDriver.py", line 18, in <module>
    import MyFile
  File "/usr/lib/atac/lib/MyFile.py", line 6, in <module>
    class myfile(file):
NameError: name 'file' is not defined
PYTHONPATH=/usr/bin/../lib/atac/lib
Chainer failed.


Any idea what's wrong here?

Kind regards

        Andreas.


[1] https://salsa.debian.org/med-team/kmer

-- 
http://fam-tille.de

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Bug#936802: kmer: Python2 removal in sid/bullseye Andreas Tille <andreas@an3as.eu> - 2019-12-19 18:20 +0100
  Bug#936802: kmer: Python2 removal in sid/bullseye Scott Talbert <swt@techie.net> - 2019-12-19 19:40 +0100
    Bug#936802: kmer: Python2 removal in sid/bullseye Andreas Tille <andreas@an3as.eu> - 2019-12-19 20:40 +0100

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