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Re: No clue yet for building snakemake since there are two dirs in .pybuild

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Hi Andreas,

> 
"/build/snakemake-5.1.5/.pybuild/cpython3_3.6_snakemake/build/tests/tests.py",
>   line 22, in <module>
>     raise Exception("snakemake not in PATH. For testing, install snakemake
>     with "
> Exception: snakemake not in PATH. For testing, install snakemake with 'pip
> install -e .'. You should do this in a separate environment (via conda or
> virtualenv).
> 
> ----------------------------------------------------------------------
> Ran 4 tests in 0.227s
> 
> FAILED (errors=1)
> E: pybuild pybuild:336: test: plugin distutils failed with: exit code=1:
> cd /build/snakemake-5.1.5/.pybuild/cpython3_3.6_snakemake/build; python3.6
> -m nose tests
> 
> 
> 
> I think the cause of the issue is that there are two dirs in .pybuild:
> 
> 
> # ls -l /build/snakemake-5.1.5/.pybuild
> total 8
> drwxr-xr-x 3 pbuilder pbuilder 4096 Jun 26 09:20 cpython3_3.6
> drwxr-xr-x 3 pbuilder pbuilder 4096 Jun 26 09:20 cpython3_3.6_snakemake
> 
> 
> and the latter contains all the installed files while the former is
> empty.  How can I prevent this?

Deleting PYBUILD_NAME from your debian/rules is sufficient to fix that. When 
set, that sets HOME to the above directory and the build system for some 
reason starts using that. 

And no, I can't explain why that is...

There are still 3 test failures; the one I glanced at was a missing build-
dep on python3-networkx (and I didn't look further).

cheers
Stuart


-- 
Stuart Prescott    http://www.nanonanonano.net/   stuart@nanonanonano.net
Debian Developer   http://www.debian.org/         stuart@debian.org
GPG fingerprint    90E2 D2C1 AD14 6A1B 7EBB 891D BBC1 7EBB 1396 F2F7

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Bug#894213: No clue yet for building snakemake since there are two dirs in .pybuild Andreas Tille <andreas@an3as.eu> - 2018-06-26 12:00 +0200
  Re: No clue yet for building snakemake since there are two dirs in .pybuild Stuart Prescott <stuart@debian.org> - 2018-06-26 18:10 +0200
    Re: No clue yet for building snakemake since there are two dirs in  .pybuild Piotr Ożarowski <piotr@debian.org> - 2018-06-27 11:10 +0200
      Re: No clue yet for building snakemake since there are two dirs in  .pybuild Piotr Ożarowski <piotr@debian.org> - 2018-06-27 14:40 +0200

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