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Groups > linux.debian.maint.python > #8203
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| From | Andreas Tille <andreas@an3as.eu> |
| Newsgroups | linux.debian.maint.python |
| Subject | Please help auto_test for python-biom-format working |
| Date | Thu, 11 Feb 2016 17:10:02 +0100 |
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Hi,
I tried to get the dh_auto_test for python-biom-format[1] working but it
seems my way to copy the test data to the right place is not doing the
trick. There are always errors like
dh_auto_test
I: pybuild base:184: cd /build/python-biom-format-2.1.5+dfsg/.pybuild/pythonX.Y_2.7/build; python2.7 -m nose tests
.......E.E...... EEE........................................................................................................................................................................................................................................S.............
======================================================================
ERROR: Correctly subsets samples in a hdf5 table
----------------------------------------------------------------------
Traceback (most recent call last):
File "/usr/lib/python2.7/dist-packages/numpy/testing/decorators.py", line 147, in skipper_func
return f(*args, **kwargs)
File "/build/python-biom-format-2.1.5+dfsg/.pybuild/pythonX.Y_2.7/build/tests/test_cli/test_subset_table.py", line 82, in test_subset_observations_hdf5
json_table_str=None)
File "biom/cli/table_subsetter.py", line 135, in _subset_table
with biom_open(hdf5_biom) as f:
File "/usr/lib/python2.7/contextlib.py", line 17, in __enter__
return self.gen.next()
File "biom/util.py", line 440, in biom_open
if os.path.getsize(fp) == 0:
File "/usr/lib/python2.7/genericpath.py", line 57, in getsize
return os.stat(filename).st_size
OSError: [Errno 2] No such file or directory: 'test_data/test.biom'
despite I did copy the test_data into {build_dir}.
Any help would be welcome.
Kind regards
Andreas.
[1] git://anonscm.debian.org/debian-med/python-biom-format.git
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Please help auto_test for python-biom-format working Andreas Tille <andreas@an3as.eu> - 2016-02-11 17:10 +0100
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