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Groups > linux.debian.bugs.rc > #283720 > unrolled thread

Bug#966963: igraph: FTBFS: dpkg-gensymbols: error: some symbols or patterns disappeared in the symbols file: see diff output below

Started byLucas Nussbaum <lucas@debian.org>
First post2020-08-03 11:10 +0200
Last post2020-08-03 21:40 +0200
Articles 2 — 2 participants

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Contents

  Bug#966963: igraph: FTBFS: dpkg-gensymbols: error: some symbols or patterns disappeared in the symbols file: see diff output below Lucas Nussbaum <lucas@debian.org> - 2020-08-03 11:10 +0200
    Bug#966963: marked as done (igraph: FTBFS: dpkg-gensymbols:  error: some symbols or patterns disappeared in the symbols file: see diff  output below) "Debian Bug Tracking System" <owner@bugs.debian.org> - 2020-08-03 21:40 +0200

#283720 — Bug#966963: igraph: FTBFS: dpkg-gensymbols: error: some symbols or patterns disappeared in the symbols file: see diff output below

FromLucas Nussbaum <lucas@debian.org>
Date2020-08-03 11:10 +0200
SubjectBug#966963: igraph: FTBFS: dpkg-gensymbols: error: some symbols or patterns disappeared in the symbols file: see diff output below
Message-ID<AzEDV-18f-105@gated-at.bofh.it>
Source: igraph
Version: 0.8.2+ds-1
Severity: serious
Justification: FTBFS on amd64
Tags: bullseye sid ftbfs
Usertags: ftbfs-20200802 ftbfs-bullseye

Hi,

During a rebuild of all packages in sid, your package failed to build
on amd64.

Relevant part (hopefully):
> make[1]: Entering directory '/<<PKGBUILDDIR>>'
> dh_fixperms
> find debian \( -name "*.xml" -o -name "*.c" \) -exec chmod -x \{\} \;
> make[1]: Leaving directory '/<<PKGBUILDDIR>>'
>    dh_missing
> dh_missing: warning: usr/lib/x86_64-linux-gnu/libigraph.la exists in debian/tmp but is not installed to anywhere 
> 	The following debhelper tools have reported what they installed (with files per package)
> 	 * dh_install: libigraph-dev (0), libigraph-examples (1), libigraph1 (0)
> 	 * dh_installdocs: libigraph-dev (0), libigraph-examples (0), libigraph1 (0)
> 	If the missing files are installed by another tool, please file a bug against it.
> 	When filing the report, if the tool is not part of debhelper itself, please reference the
> 	"Logging helpers and dh_missing" section from the "PROGRAMMING" guide for debhelper (10.6.3+).
> 	  (in the debhelper package: /usr/share/doc/debhelper/PROGRAMMING.gz)
> 	Be sure to test with dpkg-buildpackage -A/-B as the results may vary when only a subset is built
> 	If the omission is intentional or no other helper can take care of this consider adding the
> 	paths to debian/not-installed.
> 
> 	Remember to be careful with paths containing "x86_64-linux-gnu", where you might need to
> 	use a wildcard or (assuming compat 13+) e.g. ${DEB_HOST_MULTIARCH} in debian/not-installed
> 	to ensure it works on all architectures (see #961104).
>    dh_dwz
>    dh_strip
>    dh_makeshlibs
> dpkg-gensymbols: warning: some new symbols appeared in the symbols file: see diff output below
> dpkg-gensymbols: error: some symbols or patterns disappeared in the symbols file: see diff output below
> dpkg-gensymbols: warning: debian/libigraph1/DEBIAN/symbols doesn't match completely debian/libigraph1.symbols.amd64
> --- debian/libigraph1.symbols.amd64 (libigraph1_0.8.2+ds-1_amd64)
> +++ dpkg-gensymbolsEhE5ap	2020-08-02 16:50:36.637402947 +0000
> @@ -61,7 +61,7 @@
>   _ZN15DL_Indexed_ListIP5NNodeE3GetEm@Base 0.7.1
>   _ZN15DL_Indexed_ListIP5NNodeE7pDeleteEP6DLItemIS1_E@Base 0.7.1
>   _ZN15DL_Indexed_ListIP5NNodeEC1Ev@Base 0.7.1
> - _ZN15DL_Indexed_ListIPjE4PushES0_@Base 0.7.1
> +#MISSING: 0.8.2+ds-1# _ZN15DL_Indexed_ListIPjE4PushES0_@Base 0.7.1
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>   _ZN3drl11DensityGrid10GetDensityEffb@Base 0.7.1
>   _ZN3drl11DensityGrid12fineSubtractERNS_4NodeE@Base 0.7.1
> @@ -753,6 +753,8 @@
>   _ZN9HugeArrayIPS_IdEE3SetEm@Base 0.7.1
>   _ZN9HugeArrayIdE3SetEm@Base 0.7.1
>   _ZN9HugeArrayIiE3SetEm@Base 0.7.1
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>   _ZNK5bliss5Graph12is_equitableEv@Base 0.8.0
>   _ZNK5bliss5Graph15is_automorphismERKSt6vectorIjSaIjEE@Base 0.8.0
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> +#MISSING: 0.8.2+ds-1# _ZNSt3_V28__rotateIN9__gnu_cxx17__normal_iteratorIP7vd_pairSt6vectorIS3_SaIS3_EEEEEET_S9_S9_S9_St26random_access_iterator_tag@Base 0.8.0
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>   _ZNSt6vectorI7vd_pairSaIS0_EE17_M_realloc_insertIJS0_EEEvN9__gnu_cxx17__normal_iteratorIPS0_S2_EEDpOT_@Base 0.8.0
>   _ZNSt6vectorI8vbd_pairSaIS0_EE17_M_realloc_insertIJS0_EEEvN9__gnu_cxx17__normal_iteratorIPS0_S2_EEDpOT_@Base 0.8.0
>   _ZNSt6vectorIN3drl4NodeESaIS1_EE17_M_realloc_insertIJS1_EEEvN9__gnu_cxx17__normal_iteratorIPS1_S3_EEDpOT_@Base 0.8.0
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>   _ZNSt6vectorIS_IiSaIiEESaIS1_EE17_M_default_appendEm@Base 0.7.1
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> + _ZNSt6vectorISt14_List_iteratorI8vbd_pairESaIS2_EE17_M_realloc_insertIJRKS2_EEEvN9__gnu_cxx17__normal_iteratorIPS2_S4_EEDpOT_@Base 0.8.2+ds-1
>   _ZNSt6vectorISt3mapIidSt4lessIiESaISt4pairIKidEEESaIS7_EED1Ev@Base 0.7.1
>   _ZNSt6vectorISt3mapIidSt4lessIiESaISt4pairIKidEEESaIS7_EED2Ev@Base 0.7.1
>   _ZNSt6vectorISt3setIjSt4lessIjESaIjEESaIS4_EE17_M_default_appendEm@Base 0.8.0
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>   _ZSt24__merge_sort_with_bufferIN9__gnu_cxx17__normal_iteratorIP8vbd_pairSt6vectorIS2_SaIS2_EEEES3_NS0_5__ops15_Iter_comp_iterIPFbRKS2_SB_EEEEvT_SF_T0_T1_@Base 0.8.0
> - _ZSt9__find_ifIN9__gnu_cxx17__normal_iteratorIP8vbd_pairSt6vectorIS2_SaIS2_EEEENS0_5__ops10_Iter_predIPFbRKS2_EEEET_SF_SF_T0_St26random_access_iterator_tag@Base 0.8.0
> + _ZSt30__move_merge_adaptive_backwardIN9__gnu_cxx17__normal_iteratorIP7vd_pairSt6vectorIS2_SaIS2_EEEES3_S7_NS0_5__ops15_Iter_comp_iterIPFbRKS2_SB_EEEEvT_SF_T0_SG_T1_T2_@Base 0.8.2+ds-1
> +#MISSING: 0.8.2+ds-1# _ZSt9__find_ifIN9__gnu_cxx17__normal_iteratorIP8vbd_pairSt6vectorIS2_SaIS2_EEEENS0_5__ops10_Iter_predIPFbRKS2_EEEET_SF_SF_T0_St26random_access_iterator_tag@Base 0.8.0
>   _ZTI15DL_Indexed_ListIP11ClusterListIP5NNodeEE@Base 0.7.1
>   _ZTI15DL_Indexed_ListIP5NLinkE@Base 0.7.1
>   _ZTI15DL_Indexed_ListIP5NNodeE@Base 0.7.1
> dh_makeshlibs: error: failing due to earlier errors
> make: *** [debian/rules:5: binary] Error 25

The full build log is available from:
   http://qa-logs.debian.net/2020/08/02/igraph_0.8.2+ds-1_unstable.log

A list of current common problems and possible solutions is available at
http://wiki.debian.org/qa.debian.org/FTBFS . You're welcome to contribute!

About the archive rebuild: The rebuild was done on EC2 VM instances from
Amazon Web Services, using a clean, minimal and up-to-date chroot. Every
failed build was retried once to eliminate random failures.

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#283810 — Bug#966963: marked as done (igraph: FTBFS: dpkg-gensymbols: error: some symbols or patterns disappeared in the symbols file: see diff output below)

From"Debian Bug Tracking System" <owner@bugs.debian.org>
Date2020-08-03 21:40 +0200
SubjectBug#966963: marked as done (igraph: FTBFS: dpkg-gensymbols: error: some symbols or patterns disappeared in the symbols file: see diff output below)
Message-ID<AzOts-72D-19@gated-at.bofh.it>
In reply to#283720

[Multipart message — attachments visible in raw view] — view raw

Your message dated Mon, 03 Aug 2020 19:33:27 +0000
with message-id <E1k2gD9-0005Nv-GA@fasolo.debian.org>
and subject line Bug#966963: fixed in igraph 0.8.2+ds-2
has caused the Debian Bug report #966963,
regarding igraph: FTBFS: dpkg-gensymbols: error: some symbols or patterns disappeared in the symbols file: see diff output below
to be marked as done.

This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.

(NB: If you are a system administrator and have no idea what this
message is talking about, this may indicate a serious mail system
misconfiguration somewhere. Please contact owner@bugs.debian.org
immediately.)


-- 
966963: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=966963
Debian Bug Tracking System
Contact owner@bugs.debian.org with problems

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