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Groups > linux.debian.bugs.rc > #283713 > unrolled thread

Bug#966965: dune-grid-glue: FTBFS: terminate called after throwing an instance of 'Dune::Exception'

Started byLucas Nussbaum <lucas@debian.org>
First post2020-08-03 11:10 +0200
Last post2020-11-14 13:00 +0100
Articles 3 — 2 participants

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Contents

  Bug#966965: dune-grid-glue: FTBFS: terminate called after throwing an instance of 'Dune::Exception' Lucas Nussbaum <lucas@debian.org> - 2020-08-03 11:10 +0200
    Processed: Re: Bug#966965: dune-grid-glue: FTBFS: terminate  called after throwing an instance of 'Dune::Exception' "Debian Bug Tracking System" <owner@bugs.debian.org> - 2020-08-04 00:00 +0200
    Bug#966965: marked as done (dune-grid-glue: FTBFS: terminate  called after throwing an instance of 'Dune::Exception') "Debian Bug Tracking System" <owner@bugs.debian.org> - 2020-11-14 13:00 +0100

#283713 — Bug#966965: dune-grid-glue: FTBFS: terminate called after throwing an instance of 'Dune::Exception'

FromLucas Nussbaum <lucas@debian.org>
Date2020-08-03 11:10 +0200
SubjectBug#966965: dune-grid-glue: FTBFS: terminate called after throwing an instance of 'Dune::Exception'
Message-ID<AzEDT-18f-79@gated-at.bofh.it>
Source: dune-grid-glue
Version: 2.7.0-2
Severity: serious
Justification: FTBFS on amd64
Tags: bullseye sid ftbfs
Usertags: ftbfs-20200802 ftbfs-bullseye

Hi,

During a rebuild of all packages in sid, your package failed to build
on amd64.

Relevant part (hopefully):
> make[5]: Entering directory '/<<PKGBUILDDIR>>/build'
> make[5]: Nothing to be done for 'CMakeFiles/build_tests.dir/build'.
> make[5]: Leaving directory '/<<PKGBUILDDIR>>/build'
> [100%] Built target build_tests
> make[4]: Leaving directory '/<<PKGBUILDDIR>>/build'
> /usr/bin/cmake -E cmake_progress_start /<<PKGBUILDDIR>>/build/CMakeFiles 0
> make[3]: Leaving directory '/<<PKGBUILDDIR>>/build'
> make[2]: Leaving directory '/<<PKGBUILDDIR>>/build'
> cd build; PATH=/<<PKGBUILDDIR>>/debian/tmp-test:$PATH /usr/bin/dune-ctest 
>    Site: ip-172-31-4-50
>    Build name: Linux-c++
> Create new tag: 20200802-1723 - Experimental
> Test project /<<PKGBUILDDIR>>/build
>       Start  1: callmergertwicetest
>  1/12 Test  #1: callmergertwicetest ................   Passed    0.00 sec
>       Start  2: ringcommtest
>  2/12 Test  #2: ringcommtest .......................   Passed    0.32 sec
>       Start  3: ringcommtest-mpi-2
>  3/12 Test  #3: ringcommtest-mpi-2 .................***Failed    2.27 sec
> SIZE: 2
> 0: COMM 0x558be8fd81c0
> 0 Start Communication, size 2
> SIZE: 2
> 1: COMM 0x55f1640f31c0
> 1 Start Communication, size 2
> 0 maxSize done... 
> 1 maxSize done... 
> 0: size = 2
> 0: left = 1 right = 1
> 0: next = 1
> 1: size = 2
> 1: left = 0 right = 0
> 1: next = 0
> terminate called after throwing an instance of 'Dune::Exception'
> terminate called after throwing an instance of 'Dune::Exception'
>   what():  Dune::Exception [eh:/<<PKGBUILDDIR>>/dune/grid-glue/test/ringcommtest.cc:24]: MPI ERROR -- MPI_ERR_TAG: invalid tag
>   what():  Dune::Exception [eh:/<<PKGBUILDDIR>>/dune/grid-glue/test/ringcommtest.cc:24]: MPI ERROR -- MPI_ERR_TAG: invalid tag
> [ip-172-31-4-50:19859] *** Process received signal ***
> [ip-172-31-4-50:19860] *** Process received signal ***
> [ip-172-31-4-50:19859] Signal: Aborted (6)
> [ip-172-31-4-50:19859] Signal code:  (-6)
> [ip-172-31-4-50:19860] Signal: Aborted (6)
> [ip-172-31-4-50:19860] Signal code:  (-6)
> [ip-172-31-4-50:19859] [ 0] [ip-172-31-4-50:19860] [ 0] /lib/x86_64-linux-gnu/libc.so.6(+0x3bd30)[0x7fafcbac6d30]
> [ip-172-31-4-50:19859] [ 1] /lib/x86_64-linux-gnu/libc.so.6(+0x3bd30)[0x7fd42a3f2d30]
> [ip-172-31-4-50:19860] [ 1] /lib/x86_64-linux-gnu/libc.so.6(gsignal+0x141)[0x7fd42a3f2cb1]
> [ip-172-31-4-50:19860] [ 2] /lib/x86_64-linux-gnu/libc.so.6(gsignal+0x141)[0x7fafcbac6cb1]
> [ip-172-31-4-50:19859] [ 2] /lib/x86_64-linux-gnu/libc.so.6(abort+0x123)[0x7fd42a3dc537]
> [ip-172-31-4-50:19860] [ 3] /lib/x86_64-linux-gnu/libc.so.6(abort+0x123)[0x7fafcbab0537]
> [ip-172-31-4-50:19859] [ 3] /usr/lib/x86_64-linux-gnu/libstdc++.so.6(+0x9a80c)[0x7fd42a63080c]
> [ip-172-31-4-50:19860] [ 4] /usr/lib/x86_64-linux-gnu/libstdc++.so.6(+0x9a80c)[0x7fafcbd0480c]
> [ip-172-31-4-50:19859] [ 4] /usr/lib/x86_64-linux-gnu/libstdc++.so.6(+0xa58f6)[0x7fd42a63b8f6]
> [ip-172-31-4-50:19860] [ 5] /usr/lib/x86_64-linux-gnu/libstdc++.so.6(+0xa58f6)[0x7fafcbd0f8f6]
> [ip-172-31-4-50:19859] [ 5] /usr/lib/x86_64-linux-gnu/libstdc++.so.6(+0xa5961)[0x7fafcbd0f961]
> [ip-172-31-4-50:19859] [ 6] /usr/lib/x86_64-linux-gnu/libstdc++.so.6(+0xa5961)[0x7fd42a63b961]
> [ip-172-31-4-50:19860] [ 6] /usr/lib/x86_64-linux-gnu/libstdc++.so.6(+0xa5bf5)[0x7fd42a63bbf5]
> [ip-172-31-4-50:19860] [ 7] /<<PKGBUILDDIR>>/build/dune/grid-glue/test/ringcommtest(+0x3386)[0x55f1640ee386]
> [ip-172-31-4-50:19860] /usr/lib/x86_64-linux-gnu/libstdc++.so.6(+0xa5bf5)[0x7fafcbd0fbf5]
> [ip-172-31-4-50:19859] [ 7] /<<PKGBUILDDIR>>/build/dune/grid-glue/test/ringcommtest(+0x3386)[0x558be8fd3386]
> [ip-172-31-4-50:19859] [ 8] [ 8] /usr/lib/x86_64-linux-gnu/libmpi.so.40(ompi_errhandler_invoke+0xd7)[0x7fafcbe91337]
> [ip-172-31-4-50:19859] [ 9] /usr/lib/x86_64-linux-gnu/libmpi.so.40(ompi_errhandler_invoke+0xd7)[0x7fd42a7bd337]
> [ip-172-31-4-50:19860] [ 9] /usr/lib/x86_64-linux-gnu/libmpi.so.40(MPI_Isend+0x265)[0x7fafcbed17c5]
> [ip-172-31-4-50:19859] [10] /<<PKGBUILDDIR>>/build/dune/grid-glue/test/ringcommtest(main+0x949)[0x558be8fd3da9]
> [ip-172-31-4-50:19859] [11] /usr/lib/x86_64-linux-gnu/libmpi.so.40(MPI_Isend+0x265)[0x7fd42a7fd7c5]
> [ip-172-31-4-50:19860] [10] /<<PKGBUILDDIR>>/build/dune/grid-glue/test/ringcommtest(main+0x949)[0x55f1640eeda9]
> [ip-172-31-4-50:19860] [11] /lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0xea)[0x7fd42a3ddcca]
> [ip-172-31-4-50:19860] [12] /<<PKGBUILDDIR>>/build/dune/grid-glue/test/ringcommtest(_start+0x2a)[0x55f1640ef43a]
> /lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0xea)[0x7fafcbab1cca]
> [ip-172-31-4-50:19859] [12] /<<PKGBUILDDIR>>/build/dune/grid-glue/test/ringcommtest(_start+0x2a)[0x558be8fd443a]
> [ip-172-31-4-50:19859] *** End of error message ***
> [ip-172-31-4-50:19860] *** End of error message ***
> --------------------------------------------------------------------------
> Primary job  terminated normally, but 1 process returned
> a non-zero exit code. Per user-direction, the job has been aborted.
> --------------------------------------------------------------------------
> --------------------------------------------------------------------------
> mpiexec noticed that process rank 1 with PID 0 on node ip-172-31-4-50 exited on signal 6 (Aborted).
> --------------------------------------------------------------------------
> 
>       Start  4: computecyclicordertest
>  4/12 Test  #4: computecyclicordertest .............   Passed    0.00 sec
>       Start  5: disconnectedtest
>  5/12 Test  #5: disconnectedtest ...................   Passed    0.33 sec
>       Start  6: mixeddimcouplingtest
>  6/12 Test  #6: mixeddimcouplingtest ...............   Passed    0.31 sec
>       Start  7: mixeddimoverlappingtest
>  7/12 Test  #7: mixeddimoverlappingtest ............   Passed    0.30 sec
>       Start  8: mixeddimscalingtest
>  8/12 Test  #8: mixeddimscalingtest ................   Passed    0.31 sec
>       Start  9: nonoverlappingcouplingtest
>  9/12 Test  #9: nonoverlappingcouplingtest .........   Passed    0.31 sec
>       Start 10: nonoverlappingcouplingtest-mpi-2
> 10/12 Test #10: nonoverlappingcouplingtest-mpi-2 ...***Failed    2.28 sec
> ==== 2D hybrid =============================================
> ==== 2D hybrid =============================================
> This is Codim1Extractor on a <2,2> grid!
> This is Codim1Extractor on a <2,2> grid!
> added 8 subfaces
> This is Codim1Extractor on a <2,2> grid!
> added 0 subfaces
> This is Codim1Extractor on a <2,2> grid!
> added 8 subfaces
> added 0 subfaces
> GridGlue: Constructor succeeded!
> GridGlue: Constructor succeeded!
> >>>> rank 0 coords: 0 and 9
> >>>> rank 0 entities: 0 and 16
> >>>> rank 0 types: 0 and 8
> 0: size = 2
> 0: left = 1 right = 1
> 0: next = 1
> >>>> rank 1 coords: 9 and 0
> >>>> rank 1 entities: 16 and 0
> >>>> rank 1 types: 8 and 0
> 1: size = 2
> 1: left = 0 right = 0
> 1: next = 0
> terminate called after throwing an instance of 'Dune::Exception'
> terminate called after throwing an instance of 'Dune::Exception'
>   what():  Dune::Exception [eh:/<<PKGBUILDDIR>>/dune/grid-glue/test/nonoverlappingcouplingtest.cc:319]: MPI ERROR -- MPI_ERR_TAG: invalid tag
>   what():  Dune::Exception [eh:/<<PKGBUILDDIR>>/dune/grid-glue/test/nonoverlappingcouplingtest.cc:319]: MPI ERROR -- MPI_ERR_TAG: invalid tag
> [ip-172-31-4-50:19955] *** Process received signal ***
> [ip-172-31-4-50:19956] *** Process received signal ***
> [ip-172-31-4-50:19955] Signal: Aborted (6)
> [ip-172-31-4-50:19955] Signal code:  (-6)
> [ip-172-31-4-50:19956] Signal: Aborted (6)
> [ip-172-31-4-50:19956] Signal code:  (-6)
> [ip-172-31-4-50:19955] [ 0] [ip-172-31-4-50:19956] [ 0] /lib/x86_64-linux-gnu/libc.so.6(+0x3bd30)[0x7f7f66d02d30]
> [ip-172-31-4-50:19955] [ 1] /lib/x86_64-linux-gnu/libc.so.6(+0x3bd30)[0x7fcfd7c37d30]
> [ip-172-31-4-50:19956] [ 1] /lib/x86_64-linux-gnu/libc.so.6(gsignal+0x141)[0x7f7f66d02cb1]
> [ip-172-31-4-50:19955] [ 2] /lib/x86_64-linux-gnu/libc.so.6(gsignal+0x141)[0x7fcfd7c37cb1]
> [ip-172-31-4-50:19956] [ 2] /lib/x86_64-linux-gnu/libc.so.6(abort+0x123)[0x7f7f66cec537]
> [ip-172-31-4-50:19955] [ 3] /lib/x86_64-linux-gnu/libc.so.6(abort+0x123)[0x7fcfd7c21537]
> [ip-172-31-4-50:19956] [ 3] /usr/lib/x86_64-linux-gnu/libstdc++.so.6(+0x9a80c)[0x7f7f6708680c]
> [ip-172-31-4-50:19955] [ 4] /usr/lib/x86_64-linux-gnu/libstdc++.so.6(+0x9a80c)[0x7fcfd7fbb80c]
> [ip-172-31-4-50:19956] [ 4] /usr/lib/x86_64-linux-gnu/libstdc++.so.6(+0xa58f6)[0x7f7f670918f6]
> [ip-172-31-4-50:19955] [ 5] /usr/lib/x86_64-linux-gnu/libstdc++.so.6(+0xa58f6)[0x7fcfd7fc68f6]
> [ip-172-31-4-50:19956] [ 5] /usr/lib/x86_64-linux-gnu/libstdc++.so.6(+0xa5961)[0x7f7f67091961]
> [ip-172-31-4-50:19955] [ 6] /usr/lib/x86_64-linux-gnu/libstdc++.so.6(+0xa5961)[0x7fcfd7fc6961]
> [ip-172-31-4-50:19956] [ 6] /usr/lib/x86_64-linux-gnu/libstdc++.so.6(+0xa5bf5)[0x7f7f67091bf5]
> [ip-172-31-4-50:19955] [ 7] /usr/lib/x86_64-linux-gnu/libstdc++.so.6(+0xa5bf5)[0x7fcfd7fc6bf5]
> [ip-172-31-4-50:19956] [ 7] /<<PKGBUILDDIR>>/build/dune/grid-glue/test/nonoverlappingcouplingtest(+0x246b1)[0x563036acc6b1]
> [ip-172-31-4-50:19955] [ 8] /<<PKGBUILDDIR>>/build/dune/grid-glue/test/nonoverlappingcouplingtest(+0x246b1)[0x563c725126b1]
> [ip-172-31-4-50:19956] [ 8] /usr/lib/x86_64-linux-gnu/libmpi.so.40(ompi_errhandler_invoke+0xd7)[0x7f7f6724e337]
> [ip-172-31-4-50:19955] [ 9] /usr/lib/x86_64-linux-gnu/libmpi.so.40(ompi_errhandler_invoke+0xd7)[0x7fcfd8183337]
> [ip-172-31-4-50:19956] [ 9] /usr/lib/x86_64-linux-gnu/libmpi.so.40(MPI_Isend+0x265)[0x7f7f6728e7c5]
> [ip-172-31-4-50:19955] [10] /usr/lib/x86_64-linux-gnu/libmpi.so.40(MPI_Isend+0x265)[0x7fcfd81c37c5]
> [ip-172-31-4-50:19956] [10] /<<PKGBUILDDIR>>/build/dune/grid-glue/test/nonoverlappingcouplingtest(_ZN4Dune8Parallel4Impl20MPI_SendVectorInRingINS_11FieldVectorIdLi2EEEEEvRSt6vectorIT_SaIS6_EES9_iiiP19ompi_communicator_tRP14ompi_request_tSE_+0x7b)[0x563036b1066b]
> [ip-172-31-4-50:19955] [11] /<<PKGBUILDDIR>>/build/dune/grid-glue/test/nonoverlappingcouplingtest(_ZN4Dune8Parallel4Impl20MPI_SendVectorInRingINS_11FieldVectorIdLi2EEEEEvRSt6vectorIT_SaIS6_EES9_iiiP19ompi_communicator_tRP14ompi_request_tSE_+0x7b)[0x563c7255666b]
> [ip-172-31-4-50:19956] [11] /<<PKGBUILDDIR>>/build/dune/grid-glue/test/nonoverlappingcouplingtest(+0x27988)[0x563036acf988]
> [ip-172-31-4-50:19955] [12] /<<PKGBUILDDIR>>/build/dune/grid-glue/test/nonoverlappingcouplingtest(+0x27988)[0x563c72515988]
> [ip-172-31-4-50:19956] [12] /<<PKGBUILDDIR>>/build/dune/grid-glue/test/nonoverlappingcouplingtest(_ZN4Dune8GridGlue8GridGlueINS0_15Codim1ExtractorINS_8GridViewINS_26DefaultLevelGridViewTraitsIKNS_8YaspGridILi2ENS_28EquidistantOffsetCoordinatesIdLi2EEEEEEEEEEESC_E5buildEv+0xf44)[0x563036b519f4]
> [ip-172-31-4-50:19955] [13] /<<PKGBUILDDIR>>/build/dune/grid-glue/test/nonoverlappingcouplingtest(_ZN4Dune8GridGlue8GridGlueINS0_15Codim1ExtractorINS_8GridViewINS_26DefaultLevelGridViewTraitsIKNS_8YaspGridILi2ENS_28EquidistantOffsetCoordinatesIdLi2EEEEEEEEEEESC_E5buildEv+0xf44)[0x563c725979f4]
> [ip-172-31-4-50:19956] [13] /<<PKGBUILDDIR>>/build/dune/grid-glue/test/nonoverlappingcouplingtest(_Z21testMatchingCubeGridsILi2EEvv+0x36b)[0x563036b5e84b]
> [ip-172-31-4-50:19955] [14] /<<PKGBUILDDIR>>/build/dune/grid-glue/test/nonoverlappingcouplingtest(_Z21testMatchingCubeGridsILi2EEvv+0x36b)[0x563c725a484b]
> [ip-172-31-4-50:19956] [14] /<<PKGBUILDDIR>>/build/dune/grid-glue/test/nonoverlappingcouplingtest(main+0x79)[0x563036acce79]
> [ip-172-31-4-50:19955] [15] /<<PKGBUILDDIR>>/build/dune/grid-glue/test/nonoverlappingcouplingtest(main+0x79)[0x563c72512e79]
> [ip-172-31-4-50:19956] [15] /lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0xea)[0x7f7f66cedcca]
> [ip-172-31-4-50:19955] [16] /lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0xea)[0x7fcfd7c22cca]
> [ip-172-31-4-50:19956] [16] /<<PKGBUILDDIR>>/build/dune/grid-glue/test/nonoverlappingcouplingtest(_start+0x2a)[0x563036acd03a]
> [ip-172-31-4-50:19955] *** End of error message ***
> /<<PKGBUILDDIR>>/build/dune/grid-glue/test/nonoverlappingcouplingtest(_start+0x2a)[0x563c7251303a]
> [ip-172-31-4-50:19956] *** End of error message ***
> --------------------------------------------------------------------------
> Primary job  terminated normally, but 1 process returned
> a non-zero exit code. Per user-direction, the job has been aborted.
> --------------------------------------------------------------------------
> --------------------------------------------------------------------------
> mpiexec noticed that process rank 0 with PID 0 on node ip-172-31-4-50 exited on signal 6 (Aborted).
> --------------------------------------------------------------------------
> 
>       Start 11: overlappingcouplingtest
> 11/12 Test #11: overlappingcouplingtest ............   Passed    0.36 sec
>       Start 12: projectiontest
> 12/12 Test #12: projectiontest .....................   Passed    0.00 sec
> 
> 83% tests passed, 2 tests failed out of 12
> 
> Total Test time (real) =   6.83 sec
> 
> The following tests FAILED:
> 	  3 - ringcommtest-mpi-2 (Failed)
> 	 10 - nonoverlappingcouplingtest-mpi-2 (Failed)
> Errors while running CTest
> ======================================================================
> Name:      ringcommtest-mpi-2
> FullName:  ./dune/grid-glue/test/ringcommtest-mpi-2
> Status:    FAILED
> 
> ======================================================================
> Name:      nonoverlappingcouplingtest-mpi-2
> FullName:  ./dune/grid-glue/test/nonoverlappingcouplingtest-mpi-2
> Status:    FAILED
> 
> JUnit report for CTest results written to /<<PKGBUILDDIR>>/build/junit/cmake.xml
> make[1]: *** [/usr/share/dune/dune-debian.mk:39: override_dh_auto_test] Error 1

The full build log is available from:
   http://qa-logs.debian.net/2020/08/02/dune-grid-glue_2.7.0-2_unstable.log

A list of current common problems and possible solutions is available at
http://wiki.debian.org/qa.debian.org/FTBFS . You're welcome to contribute!

About the archive rebuild: The rebuild was done on EC2 VM instances from
Amazon Web Services, using a clean, minimal and up-to-date chroot. Every
failed build was retried once to eliminate random failures.

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#283826 — Processed: Re: Bug#966965: dune-grid-glue: FTBFS: terminate called after throwing an instance of 'Dune::Exception'

From"Debian Bug Tracking System" <owner@bugs.debian.org>
Date2020-08-04 00:00 +0200
SubjectProcessed: Re: Bug#966965: dune-grid-glue: FTBFS: terminate called after throwing an instance of 'Dune::Exception'
Message-ID<AzQEW-8hM-3@gated-at.bofh.it>
In reply to#283713
Processing control commands:

> tag -1 + upstream
Bug #966965 [src:dune-grid-glue] dune-grid-glue: FTBFS: terminate called after throwing an instance of 'Dune::Exception'
Added tag(s) upstream.

-- 
966965: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=966965
Debian Bug Tracking System
Contact owner@bugs.debian.org with problems

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#289881 — Bug#966965: marked as done (dune-grid-glue: FTBFS: terminate called after throwing an instance of 'Dune::Exception')

From"Debian Bug Tracking System" <owner@bugs.debian.org>
Date2020-11-14 13:00 +0100
SubjectBug#966965: marked as done (dune-grid-glue: FTBFS: terminate called after throwing an instance of 'Dune::Exception')
Message-ID<Bb2nL-1b3-5@gated-at.bofh.it>
In reply to#283713

[Multipart message — attachments visible in raw view] — view raw

Your message dated Sat, 14 Nov 2020 11:48:22 +0000
with message-id <E1kdu2Y-0000jN-4O@fasolo.debian.org>
and subject line Bug#966965: fixed in dune-grid-glue 2.7.0-3
has caused the Debian Bug report #966965,
regarding dune-grid-glue: FTBFS: terminate called after throwing an instance of 'Dune::Exception'
to be marked as done.

This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.

(NB: If you are a system administrator and have no idea what this
message is talking about, this may indicate a serious mail system
misconfiguration somewhere. Please contact owner@bugs.debian.org
immediately.)


-- 
966965: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=966965
Debian Bug Tracking System
Contact owner@bugs.debian.org with problems

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