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Groups > linux.debian.bugs.dist > #920387 > unrolled thread

Bug#909990: nibabel: FTBFS (Failed example)

Started bySantiago Vila <sanvila@debian.org>
First post2018-10-01 01:10 +0200
Last post2018-10-18 17:10 +0200
Articles 14 — 5 participants

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Contents

  Bug#909990: nibabel: FTBFS (Failed example) Santiago Vila <sanvila@debian.org> - 2018-10-01 01:10 +0200
    Bug#909990: Stange import error for nibabel when trying to import from .pybuild Andreas Tille <andreas@an3as.eu> - 2018-10-08 15:40 +0200
      Bug#909990: Stange import error for nibabel when trying to import from .pybuild Yaroslav Halchenko <debian@onerussian.com> - 2018-10-08 17:30 +0200
        Bug#909990: Stange import error for nibabel when trying to import from .pybuild Andreas Tille <tille@debian.org> - 2018-10-09 10:40 +0200
          Bug#909990: Stange import error for nibabel when trying to import from .pybuild Yaroslav Halchenko <yoh@debian.org> - 2018-10-12 15:20 +0200
            Bug#909990: Stange import error for nibabel when trying to import from .pybuild Yaroslav Halchenko <yoh@debian.org> - 2018-10-12 15:20 +0200
              Bug#909990: Stange import error for nibabel when trying to import from .pybuild Andreas Tille <tille@debian.org> - 2018-10-13 23:20 +0200
                Bug#909990: Stange import error for nibabel when trying to import from .pybuild Yaroslav Halchenko <yoh@debian.org> - 2018-10-14 02:40 +0200
                  Bug#909990: Stange import error for nibabel when trying to import from .pybuild Andreas Tille <tille@debian.org> - 2018-10-14 09:20 +0200
                    Bug#909990: Stange import error for nibabel when trying to import from .pybuild Yaroslav Halchenko <yoh@debian.org> - 2018-10-18 15:30 +0200
    Bug#909990: New version uploaded - does that problem persist? Andreas Tille <andreas@an3as.eu> - 2018-10-12 13:40 +0200
    Bug#909990: Stange import error for nibabel when trying to import from .pybuild Yaroslav Halchenko <yoh@debian.org> - 2018-10-18 15:30 +0200
      Bug#909990: Stange import error for nibabel when trying to import from .pybuild Andreas Tille <tille@debian.org> - 2018-10-18 16:30 +0200
        Bug#909990: Stange import error for nibabel when trying to import from .pybuild Yaroslav Halchenko <yoh@debian.org> - 2018-10-18 17:10 +0200

#920387 — Bug#909990: nibabel: FTBFS (Failed example)

FromSantiago Vila <sanvila@debian.org>
Date2018-10-01 01:10 +0200
SubjectBug#909990: nibabel: FTBFS (Failed example)
Message-ID<wDT0B-87w-15@gated-at.bofh.it>
Package: src:nibabel
Version: 2.3.0-1
Severity: serious
Tags: ftbfs

Dear maintainer:

I tried to build this package in buster but it failed:

--------------------------------------------------------------------------------
[...]
 debian/rules build-indep
dh build-indep --buildsystem=python_distutils --builddirectory=build --with=python2,python3
   dh_update_autotools_config -i -O--buildsystem=python_distutils -O--builddirectory=build
   dh_auto_configure -i -O--buildsystem=python_distutils -O--builddirectory=build
dh_auto_configure: Please use the third-party "pybuild" build system instead of python-distutils
dh_auto_configure: This feature will be removed in compat 12.
   debian/rules override_dh_auto_build
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_auto_build
dh_auto_build: Please use the third-party "pybuild" build system instead of python-distutils
dh_auto_build: This feature will be removed in compat 12.
	python setup.py build --force
Missing optional package "dicom" provided by package "pydicom"; you may get run-time errors
running build

[... snipped ...]

  dslice = dslice.astype(out_dtype)
./<<PKGBUILDDIR>>/nibabel/volumeutils.py:818: ComplexWarning: Casting complex values to real discards the imaginary part
  dslice = dslice.astype(in_cast)
........................................................
======================================================================
FAIL: Doctest: nibabel.deprecated.FutureWarningMixin
----------------------------------------------------------------------
Traceback (most recent call last):
  File "/usr/lib/python3.7/doctest.py", line 2198, in runTest
    raise self.failureException(self.format_failure(new.getvalue()))
AssertionError: Failed doctest test for nibabel.deprecated.FutureWarningMixin
  File "/<<PKGBUILDDIR>>/nibabel/deprecated.py", line 42, in FutureWarningMixin

----------------------------------------------------------------------
File "/<<PKGBUILDDIR>>/nibabel/deprecated.py", line 53, in nibabel.deprecated.FutureWarningMixin
Failed example:
    with warnings.catch_warnings(record=True) as warns:
        d = D()
        warns[0].message
Expected:
    FutureWarning("Please, don't use this class",)
Got:
    FutureWarning("Please, don't use this class")


======================================================================
FAIL: nibabel.tests.test_testing.test_clear_and_catch_warnings
----------------------------------------------------------------------
Traceback (most recent call last):
  File "/usr/lib/python3/dist-packages/nose/case.py", line 197, in runTest
    self.test(*self.arg)
  File "/<<PKGBUILDDIR>>/nibabel/tests/test_testing.py", line 89, in test_clear_and_catch_warnings
    assert_warn_len_equal(my_mod, 1)
  File "/<<PKGBUILDDIR>>/nibabel/tests/test_testing.py", line 72, in assert_warn_len_equal
    assert_equal(len(mod_warns), 2)  # including 'version'
AssertionError: 1 != 2

----------------------------------------------------------------------
Ran 7721 tests in 68.265s

FAILED (SKIP=55, failures=2)
make[2]: *** [Makefile:94: unittest] Error 1
make[2]: Leaving directory '/<<PKGBUILDDIR>>'
make[1]: *** [debian/rules:43: python-test3.7] Error 2
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
make: *** [debian/rules:18: build-indep] Error 2
dpkg-buildpackage: error: debian/rules build-indep subprocess returned exit status 2
--------------------------------------------------------------------------------

The build was made in my autobuilder with "dpkg-buildpackage -A"
but it also fails here:

https://tests.reproducible-builds.org/debian/rb-pkg/unstable/amd64/nibabel.html

where you can get a full build log if you need it.

If this is really a bug in one of the build-depends, please use reassign and affects,
so that this is still visible in the BTS web page for this package.

Thanks.

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#921524 — Bug#909990: Stange import error for nibabel when trying to import from .pybuild

FromAndreas Tille <andreas@an3as.eu>
Date2018-10-08 15:40 +0200
SubjectBug#909990: Stange import error for nibabel when trying to import from .pybuild
Message-ID<wGDVn-7T2-1@gated-at.bofh.it>
In reply to#920387
Hi,

to see what I can do about bug #909990 I've imported the latest version
into the packaging Git[1].  When beeing inside the main dir of the Git
repository I can easily do

neurodebian-team/pynifti(debian) $ python3
Python 3.6.6 (default, Jun 27 2018, 14:44:17) 
[GCC 8.1.0] on linux
Type "help", "copyright", "credits" or "license" for more information.
>>> import nibabel
>>>

However, if I try inside the .pybuild dir I get:

/build/nibabel-2.3.0/.pybuild/cpython3_3.6_nibabel/build# python3.6
Python 3.6.7rc1 (default, Sep 27 2018, 09:51:25) 
[GCC 8.2.0] on linux
Type "help", "copyright", "credits" or "license" for more information.
>>> import nibabel
Traceback (most recent call last):
  File "<stdin>", line 1, in <module>
  File "/build/nibabel-2.3.0/.pybuild/cpython3_3.6_nibabel/build/nibabel/__init__.py", line 45, in <module>
    from .loadsave import load, save
  File "/build/nibabel-2.3.0/.pybuild/cpython3_3.6_nibabel/build/nibabel/loadsave.py", line 18, in <module>
    from .imageclasses import all_image_classes
  File "/build/nibabel-2.3.0/.pybuild/cpython3_3.6_nibabel/build/nibabel/imageclasses.py", line 16, in <module>
    from .minc1 import Minc1Image
  File "/build/nibabel-2.3.0/.pybuild/cpython3_3.6_nibabel/build/nibabel/minc1.py", line 20, in <module>
    from .deprecated import FutureWarningMixin
ImportError: cannot import name 'FutureWarningMixin'
>>>      


This leads to errors when the build process is trying to create the
docs via

  export PYTHONPATH=`pybuild --print build_dir --interpreter python3` ; \
  cd doc && /usr/bin/make html-only

(which triggers exactly the above error message).

Any idea what might went wrong here?  Its definitely not the slightly
different Python 3.6 version - I tried a local build using 3.6.6 with
the very same effect.

Kind regards

       Andreas.

[1] Vcs-Git: https://salsa.debian.org/neurodebian-team/pynifti.git -b debian
    (yes, I switched to Branch debian instead of current package 2.3.0-1
     which has non-default Branch dist/debian/proper)

-- 
http://fam-tille.de

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#921547 — Bug#909990: Stange import error for nibabel when trying to import from .pybuild

FromYaroslav Halchenko <debian@onerussian.com>
Date2018-10-08 17:30 +0200
SubjectBug#909990: Stange import error for nibabel when trying to import from .pybuild
Message-ID<wGFDP-th-1@gated-at.bofh.it>
In reply to#921524
Thank you Andreas for looking into it

2.3.1 bugfix is around the corner
https://github.com/nipy/nibabel/pull/667
so I will aim to make sure the #909990 is fixed within it (for starters
- I do not think I observed this exception when building from current RC
  branch)


On Mon, 08 Oct 2018, Andreas Tille wrote:

> Hi,

> to see what I can do about bug #909990 I've imported the latest version
> into the packaging Git[1].  When beeing inside the main dir of the Git
> repository I can easily do

> neurodebian-team/pynifti(debian) $ python3
> Python 3.6.6 (default, Jun 27 2018, 14:44:17) 
> [GCC 8.1.0] on linux
> Type "help", "copyright", "credits" or "license" for more information.
> >>> import nibabel


> However, if I try inside the .pybuild dir I get:

> /build/nibabel-2.3.0/.pybuild/cpython3_3.6_nibabel/build# python3.6
> Python 3.6.7rc1 (default, Sep 27 2018, 09:51:25) 
> [GCC 8.2.0] on linux
> Type "help", "copyright", "credits" or "license" for more information.
> >>> import nibabel
> Traceback (most recent call last):
>   File "<stdin>", line 1, in <module>
>   File "/build/nibabel-2.3.0/.pybuild/cpython3_3.6_nibabel/build/nibabel/__init__.py", line 45, in <module>
>     from .loadsave import load, save
>   File "/build/nibabel-2.3.0/.pybuild/cpython3_3.6_nibabel/build/nibabel/loadsave.py", line 18, in <module>
>     from .imageclasses import all_image_classes
>   File "/build/nibabel-2.3.0/.pybuild/cpython3_3.6_nibabel/build/nibabel/imageclasses.py", line 16, in <module>
>     from .minc1 import Minc1Image
>   File "/build/nibabel-2.3.0/.pybuild/cpython3_3.6_nibabel/build/nibabel/minc1.py", line 20, in <module>
>     from .deprecated import FutureWarningMixin
> ImportError: cannot import name 'FutureWarningMixin'

-- 
Yaroslav O. Halchenko
Center for Open Neuroscience     http://centerforopenneuroscience.org
Dartmouth College, 419 Moore Hall, Hinman Box 6207, Hanover, NH 03755
Phone: +1 (603) 646-9834                       Fax: +1 (603) 646-1419
WWW:   http://www.linkedin.com/in/yarik        

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#921644 — Bug#909990: Stange import error for nibabel when trying to import from .pybuild

FromAndreas Tille <tille@debian.org>
Date2018-10-09 10:40 +0200
SubjectBug#909990: Stange import error for nibabel when trying to import from .pybuild
Message-ID<wGVIB-1oN-1@gated-at.bofh.it>
In reply to#921547
Hi Yaroslav,

On Mon, Oct 08, 2018 at 11:25:53AM -0400, Yaroslav Halchenko wrote:
> Thank you Andreas for looking into it

You are welcome.

> 2.3.1 bugfix is around the corner
> https://github.com/nipy/nibabel/pull/667
> so I will aim to make sure the #909990 is fixed within it (for starters
> - I do not think I observed this exception when building from current RC
>   branch)

I used this as quilt patch and the package builds now (after I excluded
another quite suspicious test in a quilt patch).  The package builds now
and I've team uploaded to unstable.

BTW, I'd consider it more straightforward if the repository would be
renamed from

   https://salsa.debian.org/neurodebian-team/pynifti

to

   https://salsa.debian.org/neurodebian-team/nibabel

since I would expect the repository named like the source package (and
some Blends tools are half way relying on this).

Kind regards

      Andreas.

-- 
http://fam-tille.de

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#922206 — Bug#909990: Stange import error for nibabel when trying to import from .pybuild

FromYaroslav Halchenko <yoh@debian.org>
Date2018-10-12 15:20 +0200
SubjectBug#909990: Stange import error for nibabel when trying to import from .pybuild
Message-ID<wI5we-1By-5@gated-at.bofh.it>
In reply to#921644
On Tue, 09 Oct 2018, Andreas Tille wrote:

> > 2.3.1 bugfix is around the corner
> > https://github.com/nipy/nibabel/pull/667
> > so I will aim to make sure the #909990 is fixed within it (for starters
> > - I do not think I observed this exception when building from current RC
> >   branch)

> I used this as quilt patch and the package builds now (after I excluded
> another quite suspicious test in a quilt patch).  The package builds now
> and I've team uploaded to unstable.

ok... will merge for the next upload to proceed -- we mitigated all
known issues, and the beast builds fine all the way down to jessie, so
release is coming soon now

> BTW, I'd consider it more straightforward if the repository would be
> renamed from

>    https://salsa.debian.org/neurodebian-team/pynifti

> to

>    https://salsa.debian.org/neurodebian-team/nibabel

> since I would expect the repository named like the source package (and
> some Blends tools are half way relying on this).

good idea, done

will commit now adjustment to debian/control

-- 
Yaroslav O. Halchenko
Center for Open Neuroscience     http://centerforopenneuroscience.org
Dartmouth College, 419 Moore Hall, Hinman Box 6207, Hanover, NH 03755
Phone: +1 (603) 646-9834                       Fax: +1 (603) 646-1419
WWW:   http://www.linkedin.com/in/yarik        

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#922207 — Bug#909990: Stange import error for nibabel when trying to import from .pybuild

FromYaroslav Halchenko <yoh@debian.org>
Date2018-10-12 15:20 +0200
SubjectBug#909990: Stange import error for nibabel when trying to import from .pybuild
Message-ID<wI5we-1By-7@gated-at.bofh.it>
In reply to#922206
On Fri, 12 Oct 2018, Yaroslav Halchenko wrote:


> On Tue, 09 Oct 2018, Andreas Tille wrote:

> > > 2.3.1 bugfix is around the corner
> > > https://github.com/nipy/nibabel/pull/667
> > > so I will aim to make sure the #909990 is fixed within it (for starters
> > > - I do not think I observed this exception when building from current RC
> > >   branch)

> > I used this as quilt patch and the package builds now (after I excluded
> > another quite suspicious test in a quilt patch).  The package builds now
> > and I've team uploaded to unstable.

> ok... will merge for the next upload to proceed -- we mitigated all
> known issues, and the beast builds fine all the way down to jessie, so
> release is coming soon now

oi... I guess we caused you confusion and unneeded work???

I see that you updated debian branch redoing packaging for 2.3.0-1 which was
uploaded already awhile back, while we use this ad-hoc dist/debian/proper
branch (should be the default when you clone that repo):

$> grep Vcs-Git debian/control
Vcs-Git: https://salsa.debian.org/neurodebian-team/pynifti.git -b dist/debian/proper

so not yet sure how to proceed with your changes. meanwhile pushed my local
state of dist/debian/proper

-- 
Yaroslav O. Halchenko
Center for Open Neuroscience     http://centerforopenneuroscience.org
Dartmouth College, 419 Moore Hall, Hinman Box 6207, Hanover, NH 03755
Phone: +1 (603) 646-9834                       Fax: +1 (603) 646-1419
WWW:   http://www.linkedin.com/in/yarik        

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#922375 — Bug#909990: Stange import error for nibabel when trying to import from .pybuild

FromAndreas Tille <tille@debian.org>
Date2018-10-13 23:20 +0200
SubjectBug#909990: Stange import error for nibabel when trying to import from .pybuild
Message-ID<wIzuh-2mD-5@gated-at.bofh.it>
In reply to#922207
On Fri, Oct 12, 2018 at 09:15:37AM -0400, Yaroslav Halchenko wrote:
> > ok... will merge for the next upload to proceed -- we mitigated all
> > known issues, and the beast builds fine all the way down to jessie, so
> > release is coming soon now
> 
> oi... I guess we caused you confusion and unneeded work???

Urgs, yes! While I for sure need to blame myself that I missed to check
the diff between repository and uploads, your naming of branches is
irritating.
 
> I see that you updated debian branch redoing packaging for 2.3.0-1 which was
> uploaded already awhile back, while we use this ad-hoc dist/debian/proper
> branch (should be the default when you clone that repo):

Could you imagine to use a branch named debian?  In my attempt to update
packages mentioned in Debian Med tasks which are not uploaded for a long
time and need fixing Vcs fields (and usually lots of lintian issues) I
migrated pyepl to the "kind of usual" repository layout.  Do you have
some tools that are relying on those unusual names (= did I broke
something when renaming dist/debian/proper to debian in pyepl)?
 
> $> grep Vcs-Git debian/control
> Vcs-Git: https://salsa.debian.org/neurodebian-team/pynifti.git -b dist/debian/proper
> 
> so not yet sure how to proceed with your changes. meanwhile pushed my local
> state of dist/debian/proper

I'd volunteer to check the diff between your current changes and my work
and merge everything - but can I please use a branch named debian? 

Kind regards

       Andreas.

-- 
http://fam-tille.de

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#922399 — Bug#909990: Stange import error for nibabel when trying to import from .pybuild

FromYaroslav Halchenko <yoh@debian.org>
Date2018-10-14 02:40 +0200
SubjectBug#909990: Stange import error for nibabel when trying to import from .pybuild
Message-ID<wICBP-46I-7@gated-at.bofh.it>
In reply to#922375
On Sat, 13 Oct 2018, Andreas Tille wrote:

> On Fri, Oct 12, 2018 at 09:15:37AM -0400, Yaroslav Halchenko wrote:
> > > ok... will merge for the next upload to proceed -- we mitigated all
> > > known issues, and the beast builds fine all the way down to jessie, so
> > > release is coming soon now

> > oi... I guess we caused you confusion and unneeded work???

> Urgs, yes! While I for sure need to blame myself that I missed to check
> the diff between repository and uploads, your naming of branches is
> irritating.

> > I see that you updated debian branch redoing packaging for 2.3.0-1 which was
> > uploaded already awhile back, while we use this ad-hoc dist/debian/proper
> > branch (should be the default when you clone that repo):

> Could you imagine to use a branch named debian?  In my attempt to update
> packages mentioned in Debian Med tasks which are not uploaded for a long
> time and need fixing Vcs fields (and usually lots of lintian issues) I
> migrated pyepl to the "kind of usual" repository layout.  Do you have
> some tools that are relying on those unusual names (= did I broke
> something when renaming dist/debian/proper to debian in pyepl)?

> > $> grep Vcs-Git debian/control
> > Vcs-Git: https://salsa.debian.org/neurodebian-team/pynifti.git -b dist/debian/proper

> > so not yet sure how to proceed with your changes. meanwhile pushed my local
> > state of dist/debian/proper

> I'd volunteer to check the diff between your current changes and my work
> and merge everything - but can I please use a branch named debian? 

quick one:  well, the main confusion stems from that fact that
originally it was pynifti project and there is still that debian branch
for its packaging, which I thought would be the one up to date with

$> apt-cache policy python-nifti
python-nifti:
  Installed: (none)
  Candidate: 0.20100607.1-4.1
  Version table:
     0.20100607.1-4.1 600
        100 http://http.debian.net/debian stretch/main amd64 Packages
        600 http://http.debian.net/debian sid/main amd64 Packages
     0.20100607.1-4~nd70+1+nd90+1 500
        500 http://neuro.debian.net/debian stretch/main amd64 Packages

but now I don't know -- locally it is stuck somewhere in 2009.  So, sure
-- could be 'debian' for what I care

-- 
Yaroslav O. Halchenko
Center for Open Neuroscience     http://centerforopenneuroscience.org
Dartmouth College, 419 Moore Hall, Hinman Box 6207, Hanover, NH 03755
Phone: +1 (603) 646-9834                       Fax: +1 (603) 646-1419
WWW:   http://www.linkedin.com/in/yarik        

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#922416 — Bug#909990: Stange import error for nibabel when trying to import from .pybuild

FromAndreas Tille <tille@debian.org>
Date2018-10-14 09:20 +0200
SubjectBug#909990: Stange import error for nibabel when trying to import from .pybuild
Message-ID<wIIQV-7Xf-1@gated-at.bofh.it>
In reply to#922399
Hi Yaroslav,

On Sat, Oct 13, 2018 at 08:29:53PM -0400, Yaroslav Halchenko wrote:
> 
> > I'd volunteer to check the diff between your current changes and my work
> > and merge everything - but can I please use a branch named debian? 
> 
> quick one:  well, the main confusion stems from that fact that
> originally it was pynifti project and there is still that debian branch
> for its packaging, which I thought would be the one up to date with
> 
> $> apt-cache policy python-nifti
> python-nifti:
>   Installed: (none)
>   Candidate: 0.20100607.1-4.1
>   Version table:
>      0.20100607.1-4.1 600
>         100 http://http.debian.net/debian stretch/main amd64 Packages
>         600 http://http.debian.net/debian sid/main amd64 Packages
>      0.20100607.1-4~nd70+1+nd90+1 500
>         500 http://neuro.debian.net/debian stretch/main amd64 Packages
> 
> but now I don't know -- locally it is stuck somewhere in 2009.  So, sure
> -- could be 'debian' for what I care

I took your word as confirmation to restructure the repository.
Moreover I have ported all my changes to this repository.  I have also
seen that you commited some git state.  I have used git mode in watch
file to easily fetch the latest HEAD from upstream and at the same time
be able to use Debian tools.  I have not tagged the status as upload
since it might be better if you have a final review.

Kind regards

       Andreas.

-- 
http://fam-tille.de

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#923138 — Bug#909990: Stange import error for nibabel when trying to import from .pybuild

FromYaroslav Halchenko <yoh@debian.org>
Date2018-10-18 15:30 +0200
SubjectBug#909990: Stange import error for nibabel when trying to import from .pybuild
Message-ID<wKgxb-6rK-5@gated-at.bofh.it>
In reply to#922416
On Sun, 14 Oct 2018, Andreas Tille wrote:

> Hi Yaroslav,

> On Sat, Oct 13, 2018 at 08:29:53PM -0400, Yaroslav Halchenko wrote:

> > > I'd volunteer to check the diff between your current changes and my work
> > > and merge everything - but can I please use a branch named debian? 

> > quick one:  well, the main confusion stems from that fact that
> > originally it was pynifti project and there is still that debian branch
> > for its packaging, which I thought would be the one up to date with

> > $> apt-cache policy python-nifti
> > python-nifti:
> >   Installed: (none)
> >   Candidate: 0.20100607.1-4.1
> >   Version table:
> >      0.20100607.1-4.1 600
> >         100 http://http.debian.net/debian stretch/main amd64 Packages
> >         600 http://http.debian.net/debian sid/main amd64 Packages
> >      0.20100607.1-4~nd70+1+nd90+1 500
> >         500 http://neuro.debian.net/debian stretch/main amd64 Packages

> > but now I don't know -- locally it is stuck somewhere in 2009.  So, sure
> > -- could be 'debian' for what I care

> I took your word as confirmation to restructure the repository.
> Moreover I have ported all my changes to this repository.  I have also
> seen that you commited some git state.  I have used git mode in watch
> file to easily fetch the latest HEAD from upstream and at the same time
> be able to use Debian tools.  I have not tagged the status as upload
> since it might be better if you have a final review.

Yet to look at your changes, but for now I have

- pushed debian/2.3.1-1  packaging (withing "old" custom
  "on top of upstream releases in git" dist/debian/proper branch)

- force-pushed  

	$> git push -f  salsa debian/2.3.0-1 2.3.0     
	Enumerating objects: 1, done.
	Counting objects: 100% (1/1), done.
	Writing objects: 100% (1/1), 828 bytes | 828.00 KiB/s, done.
	Total 1 (delta 0), reused 0 (delta 0)
	To salsa.debian.org:neurodebian-team/nibabel.git
	 + 3bb95b3b...1ea63921 2.3.0 -> 2.3.0 (forced update)
	 + 62f64245...8519cb3d debian/2.3.0-1 -> debian/2.3.0-1 (forced update)

so they correspond to the previous release which we already had in debian.

-- 
Yaroslav O. Halchenko
Center for Open Neuroscience     http://centerforopenneuroscience.org
Dartmouth College, 419 Moore Hall, Hinman Box 6207, Hanover, NH 03755
Phone: +1 (603) 646-9834                       Fax: +1 (603) 646-1419
WWW:   http://www.linkedin.com/in/yarik        

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#922194 — Bug#909990: New version uploaded - does that problem persist?

FromAndreas Tille <andreas@an3as.eu>
Date2018-10-12 13:40 +0200
SubjectBug#909990: New version uploaded - does that problem persist?
Message-ID<wI3Xr-BQ-3@gated-at.bofh.it>
In reply to#920387
Control: severity -1 important
Control: tags -1 moreinfo

Hi Santiago,

thanks for your QA check.  I have uploaded a new version.  Could you
please redo your batch job with this version and confirm whether the
problem persists or if it is possibly solved by the new version?

Kind regards

      Andreas.

-- 
http://fam-tille.de

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#923137 — Bug#909990: Stange import error for nibabel when trying to import from .pybuild

FromYaroslav Halchenko <yoh@debian.org>
Date2018-10-18 15:30 +0200
SubjectBug#909990: Stange import error for nibabel when trying to import from .pybuild
Message-ID<wKgxb-6rK-3@gated-at.bofh.it>
In reply to#920387
On Thu, 18 Oct 2018, Yaroslav Halchenko wrote:

> Yet to look at your changes, but for now I have

> - pushed debian/2.3.1-1  packaging (withing "old" custom
>   "on top of upstream releases in git" dist/debian/proper branch)

> - force-pushed  

> 	$> git push -f  salsa debian/2.3.0-1 2.3.0     
> 	Enumerating objects: 1, done.
> 	Counting objects: 100% (1/1), done.
> 	Writing objects: 100% (1/1), 828 bytes | 828.00 KiB/s, done.
> 	Total 1 (delta 0), reused 0 (delta 0)
> 	To salsa.debian.org:neurodebian-team/nibabel.git
> 	 + 3bb95b3b...1ea63921 2.3.0 -> 2.3.0 (forced update)
> 	 + 62f64245...8519cb3d debian/2.3.0-1 -> debian/2.3.0-1 (forced update)

> so they correspond to the previous release which we already had in debian.

oh now it is a mess -- I have missed the fact that you uploaded a
snapshot  2.3.0+git20181012.791678e-1  to Debian...

-- 
Yaroslav O. Halchenko
Center for Open Neuroscience     http://centerforopenneuroscience.org
Dartmouth College, 419 Moore Hall, Hinman Box 6207, Hanover, NH 03755
Phone: +1 (603) 646-9834                       Fax: +1 (603) 646-1419
WWW:   http://www.linkedin.com/in/yarik        

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#923150 — Bug#909990: Stange import error for nibabel when trying to import from .pybuild

FromAndreas Tille <tille@debian.org>
Date2018-10-18 16:30 +0200
SubjectBug#909990: Stange import error for nibabel when trying to import from .pybuild
Message-ID<wKhtg-717-1@gated-at.bofh.it>
In reply to#923137
On Thu, Oct 18, 2018 at 09:21:37AM -0400, Yaroslav Halchenko wrote:
> 
> On Thu, 18 Oct 2018, Yaroslav Halchenko wrote:
> 
> > Yet to look at your changes, but for now I have
> 
> > - pushed debian/2.3.1-1  packaging (withing "old" custom
> >   "on top of upstream releases in git" dist/debian/proper branch)
> 
> > - force-pushed  
> 
> > 	$> git push -f  salsa debian/2.3.0-1 2.3.0     
> > 	Enumerating objects: 1, done.
> > 	Counting objects: 100% (1/1), done.
> > 	Writing objects: 100% (1/1), 828 bytes | 828.00 KiB/s, done.
> > 	Total 1 (delta 0), reused 0 (delta 0)
> > 	To salsa.debian.org:neurodebian-team/nibabel.git
> > 	 + 3bb95b3b...1ea63921 2.3.0 -> 2.3.0 (forced update)
> > 	 + 62f64245...8519cb3d debian/2.3.0-1 -> debian/2.3.0-1 (forced update)
> 
> > so they correspond to the previous release which we already had in debian.
> 
> oh now it is a mess -- I have missed the fact that you uploaded a
> snapshot  2.3.0+git20181012.791678e-1  to Debian...

I hope this will not create any trouble.  I assumed you would follow Git
HEAD.  if not the watch file needs to be reverted. 

Sorry if I might have created work instead of lending a helping hand.

Kind regards

       Andreas.

-- 
http://fam-tille.de

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#923158 — Bug#909990: Stange import error for nibabel when trying to import from .pybuild

FromYaroslav Halchenko <yoh@debian.org>
Date2018-10-18 17:10 +0200
SubjectBug#909990: Stange import error for nibabel when trying to import from .pybuild
Message-ID<wKi5Y-7tG-15@gated-at.bofh.it>
In reply to#923150

[Multipart message — attachments visible in raw view] — view raw

On Thu, 18 Oct 2018, Andreas Tille wrote:

> On Thu, Oct 18, 2018 at 09:21:37AM -0400, Yaroslav Halchenko wrote:

> > On Thu, 18 Oct 2018, Yaroslav Halchenko wrote:

> > > Yet to look at your changes, but for now I have

> > > - pushed debian/2.3.1-1  packaging (withing "old" custom
> > >   "on top of upstream releases in git" dist/debian/proper branch)

> > > - force-pushed  

> > > 	$> git push -f  salsa debian/2.3.0-1 2.3.0     
> > > 	Enumerating objects: 1, done.
> > > 	Counting objects: 100% (1/1), done.
> > > 	Writing objects: 100% (1/1), 828 bytes | 828.00 KiB/s, done.
> > > 	Total 1 (delta 0), reused 0 (delta 0)
> > > 	To salsa.debian.org:neurodebian-team/nibabel.git
> > > 	 + 3bb95b3b...1ea63921 2.3.0 -> 2.3.0 (forced update)
> > > 	 + 62f64245...8519cb3d debian/2.3.0-1 -> debian/2.3.0-1 (forced update)

> > > so they correspond to the previous release which we already had in debian.

> > oh now it is a mess -- I have missed the fact that you uploaded a
> > snapshot  2.3.0+git20181012.791678e-1  to Debian...

> I hope this will not create any trouble.  I assumed you would follow Git
> HEAD.  if not the watch file needs to be reverted. 

I don't think revertions would be needed, but we would need to merge the
two

> Sorry if I might have created work instead of lending a helping hand.

life is life ;-)  regardless, thanks for your work!

-- 
Yaroslav O. Halchenko
Center for Open Neuroscience     http://centerforopenneuroscience.org
Dartmouth College, 419 Moore Hall, Hinman Box 6207, Hanover, NH 03755
Phone: +1 (603) 646-9834                       Fax: +1 (603) 646-1419
WWW:   http://www.linkedin.com/in/yarik        

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