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Groups > linux.debian.bugs.dist > #1242029 > unrolled thread

Bug#1103162: nmu: coot_1.1.15+dfsg-1

Started byMichael Banck <mbanck@debian.org>
First post2025-04-14 20:00 +0200
Last post2025-04-25 09:00 +0200
Articles 6 — 2 participants

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Contents

  Bug#1103162: nmu: coot_1.1.15+dfsg-1 Michael Banck <mbanck@debian.org> - 2025-04-14 20:00 +0200
    Bug#1103162: nmu: coot_1.1.15+dfsg-1 Sebastian Ramacher <sramacher@debian.org> - 2025-04-15 08:50 +0200
      Bug#1103162: nmu: coot_1.1.15+dfsg-1 Michael Banck <mbanck@debian.org> - 2025-04-15 17:20 +0200
        Bug#1103162: nmu: coot_1.1.15+dfsg-1 Sebastian Ramacher <sramacher@debian.org> - 2025-04-17 08:50 +0200
          Bug#1103162: nmu: coot_1.1.15+dfsg-1 Michael Banck <mbanck@debian.org> - 2025-04-17 23:30 +0200
    Bug#1103162: nmu: coot_1.1.15+dfsg-1 Michael Banck <mbanck@debian.org> - 2025-04-25 09:00 +0200

#1242029 — Bug#1103162: nmu: coot_1.1.15+dfsg-1

FromMichael Banck <mbanck@debian.org>
Date2025-04-14 20:00 +0200
SubjectBug#1103162: nmu: coot_1.1.15+dfsg-1
Message-ID<KBwg9-dvyF-3@gated-at.bofh.it>
Package: release.debian.org
Severity: normal
User: release.debian.org@packages.debian.org
Usertags: binnmu

nmu coot_1.1.15+dfsg-1 . ANY . unstable . -m "Rebuild against librdkit-dev"

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#1242117

FromSebastian Ramacher <sramacher@debian.org>
Date2025-04-15 08:50 +0200
Message-ID<KBIhj-dDSA-3@gated-at.bofh.it>
In reply to#1242029
Control: tags -1 moreinfo

On 2025-04-14 19:49:00 +0200, Michael Banck wrote:
> Package: release.debian.org
> Severity: normal
> User: release.debian.org@packages.debian.org
> Usertags: binnmu
> 
> nmu coot_1.1.15+dfsg-1 . ANY . unstable . -m "Rebuild against librdkit-dev"

Why is this needed?

Cheers
-- 
Sebastian Ramacher

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#1242163

FromMichael Banck <mbanck@debian.org>
Date2025-04-15 17:20 +0200
Message-ID<KBQeR-dJn0-3@gated-at.bofh.it>
In reply to#1242117
Hi,

On Tue, Apr 15, 2025 at 08:40:59AM +0200, Sebastian Ramacher wrote:
> Control: tags -1 moreinfo
> 
> On 2025-04-14 19:49:00 +0200, Michael Banck wrote:
> > Package: release.debian.org
> > Severity: normal
> > User: release.debian.org@packages.debian.org
> > Usertags: binnmu
> > 
> > nmu coot_1.1.15+dfsg-1 . ANY . unstable . -m "Rebuild against librdkit-dev"
> 
> Why is this needed?

The autopkgtests fail:

https://ci.debian.net/packages/c/coot/testing/amd64/
https://ci.debian.net/packages/c/coot/testing/amd64/59906919/


Michael

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#1242410

FromSebastian Ramacher <sramacher@debian.org>
Date2025-04-17 08:50 +0200
Message-ID<KCrep-e7p1-1@gated-at.bofh.it>
In reply to#1242163
On 2025-04-15 17:10:44 +0200, Michael Banck wrote:
> Hi,
> 
> On Tue, Apr 15, 2025 at 08:40:59AM +0200, Sebastian Ramacher wrote:
> > Control: tags -1 moreinfo
> > 
> > On 2025-04-14 19:49:00 +0200, Michael Banck wrote:
> > > Package: release.debian.org
> > > Severity: normal
> > > User: release.debian.org@packages.debian.org
> > > Usertags: binnmu
> > > 
> > > nmu coot_1.1.15+dfsg-1 . ANY . unstable . -m "Rebuild against librdkit-dev"
> > 
> > Why is this needed?
> 
> The autopkgtests fail:
> 
> https://ci.debian.net/packages/c/coot/testing/amd64/
> https://ci.debian.net/packages/c/coot/testing/amd64/59906919/

If symbols go missing from librdkit, this smells like a SONAME bump that
is missing from librdkit. Why did this symbol disappear?

Best
Sebastian
-- 
Sebastian Ramacher

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#1242508

FromMichael Banck <mbanck@debian.org>
Date2025-04-17 23:30 +0200
Message-ID<KCEY1-egoG-5@gated-at.bofh.it>
In reply to#1242410
Hi,

On Thu, Apr 17, 2025 at 08:41:35AM +0200, Sebastian Ramacher wrote:
> On 2025-04-15 17:10:44 +0200, Michael Banck wrote:
> > On Tue, Apr 15, 2025 at 08:40:59AM +0200, Sebastian Ramacher wrote:
> > > Control: tags -1 moreinfo
> > > 
> > > On 2025-04-14 19:49:00 +0200, Michael Banck wrote:
> > > > Package: release.debian.org
> > > > Severity: normal
> > > > User: release.debian.org@packages.debian.org
> > > > Usertags: binnmu
> > > > 
> > > > nmu coot_1.1.15+dfsg-1 . ANY . unstable . -m "Rebuild against librdkit-dev"
> > > 
> > > Why is this needed?
> > 
> > The autopkgtests fail:
> > 
> > https://ci.debian.net/packages/c/coot/testing/amd64/
> > https://ci.debian.net/packages/c/coot/testing/amd64/59906919/
> 
> If symbols go missing from librdkit, this smells like a SONAME bump that
> is missing from librdkit. 

Right. But coot is the only reverse-depdency, and I think it is ok to
rebuild it for trixie and then re-assess the situation post-trixie. E.g.
we could remove the shared library.

> Why did this symbol disappear?

Because upstream is playing loose with the library API I guess and/or do
not care all that much. It is nothing new with scientific packages and a
reason I mostly only ship -dev libraries anymore.

Should we rename the shared library package to librdkit1d or something
instead?


Michael

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#1243508

FromMichael Banck <mbanck@debian.org>
Date2025-04-25 09:00 +0200
Message-ID<KFlcu-g5Dm-1@gated-at.bofh.it>
In reply to#1242029
Hi,

On Thu, Apr 24, 2025 at 01:05:33PM +0200, Paul Gevers wrote:
> On Mon, 21 Apr 2025 12:50:15 +0200 Sebastian Ramacher <sramacher@debian.org>
> wrote:
> > > Right. But coot is the only reverse-depdency, and I think it is ok to
> > > rebuild it for trixie and then re-assess the situation post-trixie. E.g.
> > > we could remove the shared library.
> > 
> > It is not ideal, but scheduled the rebuild. Please make sure that
> > librdkit1t64 gains a Breaks on the old version of coot.
> 
> This still needs to happen. As I scheduled the autopkgtest combination to
> quickly in reply to bug 1103579 (which was CC-ed to the RT) rdkit is now
> blocked by an explicit block hint by me. Please let us know when the Breaks
> is added.

I've just uploaded rdkit_202503.1-3 with a Breaks: coot (<<
1.1.15+dfsg-1) for librdkit1t64.


Michael

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