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Orthanc Download Dicomdir

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Few years ago we had explored orthanc-server as an alternative to current couchdb / documents folder. At that time extra effort in installing and managing additional server was a big issue. Since then advent of docker has simplified the installation and maintenance of these servers. For installations that are heavy users of documents deploying the dicom server will be a robust alternative.


For downloading them, there are two ways. You can when viewing an image select download as dicomdir and open the files with a DICOM viewer or install a DICOM viewer and query/retrieve the images from Orthanc.



orthanc download dicomdir

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so orthanc.PatientName will only return JaneDoe in the above example. Andorthanc.SeriesDescriptions will return all dicom SeriesDescriptions forpatient 'JaneDoe' and study with description 'CT Examination'


Will obtain all pixel data for a single series. If multiple instances arepresent in the series, the pixel arrays are sorted by the the orthanc serverinto a 3D volume of size MNS*C. Where M and N are the number of pixels,S the number of slices and C the number of color channels (1 for grayscale,3 for color).


An exception is the get_array method which gives the same result regardlessof the sorting order. 3D arrays are composed by the orthancserver which always uses a default (slice) sorting order (probably using theImagePositionPatient and ImageOrientationPatient dicom tags).


dinifti converts single files, but also supports fully automatic batchconversions of complete dicomdirs. Additionally, converted NIfTI files canbe properly named, using image series information from the DICOM files.

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