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Re: Enabling Python bindings for jellyfish

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Just FYI - there's a Python module called Jellyfish about to be uploaded;
can we resolve the name collision early?

https://pypi.python.org/pypi/jellyfish

Paul

On Tue, Dec 29, 2015 at 12:06 PM, Scott Kitterman <debian@kitterman.com>
wrote:

> On Tuesday, December 29, 2015 11:52:07 AM Scott Kitterman wrote:
> > On Tuesday, December 29, 2015 12:30:14 AM Andreas Tille wrote:
> > > Hi,
> > >
> > > I realised that for jellyfish[1] Python bindings can be activated.  I
> > > tried to do so and configuring and building works fine - but I have no
> > > idea how to sensibly install the files into the python-jellyfish
> > > package.  Any idea how to call swig/python/setup.py or do something
> else
> > > to install the files into the right location.
> > >
> > > Any help?
> > >
> > > Kind regards
> > >
> > >         Andreas.
> > >
> > > [1] git://anonscm.debian.org/debian-med/jellyfish.git
> >
> > I haven't been able to actually test this since when I try to build it, I
> > get this error:
> >
> > jellyfish_wrap.cxx:3104:33: fatal error: jellyfish/mer_dna.hpp: No such
> file
> > or directory
> >
> > I think it should ~work.  Note that these bindings are for python3, not
> > python.  I've adjusted things accordingly.  The configure changes I made
> (so
> > that configure wouldn't fail) mean perl bindings don't get built
> either.  I
> > didn't check if that was working before.
> >
> > Scott K
>
> Correction: It's not in the diff, but I had to remove the auto-configure
> override to get through configure.
>
> Scott K
>
>


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Thread

Enabling Python bindings for jellyfish Andreas Tille <andreas@an3as.eu> - 2015-12-29 00:40 +0100
  Re: Enabling Python bindings for jellyfish Scott Kitterman <debian@kitterman.com> - 2015-12-29 18:00 +0100
    Re: Enabling Python bindings for jellyfish Scott Kitterman <debian@kitterman.com> - 2015-12-29 18:10 +0100
      Re: Enabling Python bindings for jellyfish Paul Tagliamonte <paultag@ubuntu.com> - 2015-12-29 18:30 +0100
        Re: Enabling Python bindings for jellyfish Paul Tagliamonte <paultag@ubuntu.com> - 2015-12-29 19:00 +0100
          Re: Enabling Python bindings for jellyfish Scott Kitterman <debian@kitterman.com> - 2015-12-29 20:30 +0100
        Re: Enabling Python bindings for jellyfish Scott Kitterman <debian@kitterman.com> - 2015-12-29 19:00 +0100
          Re: Enabling Python bindings for jellyfish "Diego M. Rodriguez" <diego.plan9@gmail.com> - 2015-12-29 19:30 +0100
            Re: Enabling Python bindings for jellyfish Paul Tagliamonte <paultag@ubuntu.com> - 2015-12-29 20:10 +0100
              Re: Enabling Python bindings for jellyfish Andreas Tille <andreas@an3as.eu> - 2015-12-29 21:50 +0100
              Re: Enabling Python bindings for jellyfish "Diego M. Rodriguez" <diego.plan9@gmail.com> - 2015-12-31 18:40 +0100
                Re: Enabling Python bindings for jellyfish Scott Kitterman <debian@kitterman.com> - 2015-12-31 18:50 +0100
                Re: Enabling Python bindings for jellyfish "Diego M. Rodriguez" <diego.plan9@gmail.com> - 2015-12-31 20:30 +0100
                Re: Enabling Python bindings for jellyfish Andreas Tille <andreas@fam-tille.de> - 2015-12-31 21:40 +0100
                Re: Enabling Python bindings for jellyfish Guillaume Marcais <gmarcais@umd.edu> - 2016-01-01 00:50 +0100
                Re: Enabling Python bindings for jellyfish Andreas Tille <andreas@an3as.eu> - 2016-01-01 19:30 +0100

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