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Re: Enabling Python bindings for jellyfish

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On Tuesday, December 29, 2015 12:30:14 AM Andreas Tille wrote:
> Hi,
> 
> I realised that for jellyfish[1] Python bindings can be activated.  I
> tried to do so and configuring and building works fine - but I have no
> idea how to sensibly install the files into the python-jellyfish
> package.  Any idea how to call swig/python/setup.py or do something else
> to install the files into the right location.
> 
> Any help?
> 
> Kind regards
> 
>         Andreas.
> 
> [1] git://anonscm.debian.org/debian-med/jellyfish.git

I haven't been able to actually test this since when I try to build it, I get 
this error:

jellyfish_wrap.cxx:3104:33: fatal error: jellyfish/mer_dna.hpp: No such file or 
directory

I think it should ~work.  Note that these bindings are for python3, not 
python.  I've adjusted things accordingly.  The configure changes I made (so 
that configure wouldn't fail) mean perl bindings don't get built either.  I 
didn't check if that was working before.

Scott K

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Thread

Enabling Python bindings for jellyfish Andreas Tille <andreas@an3as.eu> - 2015-12-29 00:40 +0100
  Re: Enabling Python bindings for jellyfish Scott Kitterman <debian@kitterman.com> - 2015-12-29 18:00 +0100
    Re: Enabling Python bindings for jellyfish Scott Kitterman <debian@kitterman.com> - 2015-12-29 18:10 +0100
      Re: Enabling Python bindings for jellyfish Paul Tagliamonte <paultag@ubuntu.com> - 2015-12-29 18:30 +0100
        Re: Enabling Python bindings for jellyfish Paul Tagliamonte <paultag@ubuntu.com> - 2015-12-29 19:00 +0100
          Re: Enabling Python bindings for jellyfish Scott Kitterman <debian@kitterman.com> - 2015-12-29 20:30 +0100
        Re: Enabling Python bindings for jellyfish Scott Kitterman <debian@kitterman.com> - 2015-12-29 19:00 +0100
          Re: Enabling Python bindings for jellyfish "Diego M. Rodriguez" <diego.plan9@gmail.com> - 2015-12-29 19:30 +0100
            Re: Enabling Python bindings for jellyfish Paul Tagliamonte <paultag@ubuntu.com> - 2015-12-29 20:10 +0100
              Re: Enabling Python bindings for jellyfish Andreas Tille <andreas@an3as.eu> - 2015-12-29 21:50 +0100
              Re: Enabling Python bindings for jellyfish "Diego M. Rodriguez" <diego.plan9@gmail.com> - 2015-12-31 18:40 +0100
                Re: Enabling Python bindings for jellyfish Scott Kitterman <debian@kitterman.com> - 2015-12-31 18:50 +0100
                Re: Enabling Python bindings for jellyfish "Diego M. Rodriguez" <diego.plan9@gmail.com> - 2015-12-31 20:30 +0100
                Re: Enabling Python bindings for jellyfish Andreas Tille <andreas@fam-tille.de> - 2015-12-31 21:40 +0100
                Re: Enabling Python bindings for jellyfish Guillaume Marcais <gmarcais@umd.edu> - 2016-01-01 00:50 +0100
                Re: Enabling Python bindings for jellyfish Andreas Tille <andreas@an3as.eu> - 2016-01-01 19:30 +0100

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