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Is there a way to export a dynamic image sequence (xyzt) from imageJ/Fiji to DICOM?

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Hi Everybody,

I am having the following issue.
In general I use Amide (a free software package) to view my DICOM files.
It is pretty good to study dynamic PET-images and okay in drawing ROIs.
My interest lies in the evolution of signal intensity over the course of time for ROIs I draw on the images.
Because of some scan software issues I need to correct all my images with a time dependent factor (something to do with decay correction). I have written a script in ImageJ which can do this fine. But now I want to export this image sequence again as slices with a DICOM header/information that recognises that the slices have xyzt coordinates.

I only manage to get a DICOM file in which the t is not condisered and all my slices (x,y) are arranged in a row (z).

In my case I have for instance 1260 images which consist of 200 x , 200 y pixels. The depth of the 3D scan is 63 slices and an 3D image is generated each 5 minutes for 100 minutes so I have 20 t-point yielding 1260 x,y images.

In a nutshell;

    I import dynamic 3D images in ImageJ
    I correct them with a ImageJ script
    I want to export them with time information in xyzt format.

Hopefully anybody has some inspiration to resolve these issues.

Thanks a lot.
Kind regards,
Michiel

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Is there a way to export a dynamic image sequence (xyzt) from imageJ/Fiji to DICOM? Michiel Hubeau <labplantecology@gmail.com> - 2015-11-13 05:25 -0800

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