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Groups > linux.debian.maint.java > #8473

Help getting missing classes found by prottest

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Hi,

I try to package prottest[1] but I get errors of kind

i    [mkdir] Created dir: /build/prottest-3.4+dfsg/build/empty
    [javac] Compiling 120 source files to /build/prottest-3.4+dfsg/build/classes
    [javac] /build/prottest-3.4+dfsg/src/main/java/es/uvigo/darwin/prottest/ProtTest.java:23: error: package mpi does not exist
    [javac] import mpi.MPI;
    [javac]           ^
    [javac] /build/prottest-3.4+dfsg/src/main/java/es/uvigo/darwin/prottest/ProtTest.java:55: error: package pal.misc does not exist
    [javac] import pal.misc.Identifier;
    [javac]                ^
    [javac] /build/prottest-3.4+dfsg/src/main/java/es/uvigo/darwin/prottest/ProtTest.java:56: error: package pal.tree does not exist
    [javac] import pal.tree.Tree;
    [javac]                ^
    [javac] /build/prottest-3.4+dfsg/src/main/java/es/uvigo/darwin/prottest/util/factory/ProtTestFactory.java:30: error: package pal.alignment does not exist
    [javac] import pal.alignment.Alignment;
    [javac]                     ^
...


I have no idea why neither mpi nor pal classes are found since I tried
to add mpj and pal but obviously failed.

Any help is welcome

      Andreas.


[1] git://anonscm.debian.org/debian-med/prottest.git

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Thread

Help getting missing classes found by prottest Andreas Tille <andreas@an3as.eu> - 2015-10-16 22:30 +0200
  Re: Help getting missing classes found by prottest Markus Koschany <apo@gambaru.de> - 2015-10-16 23:30 +0200
    Re: Help getting missing classes found by prottest Emmanuel Bourg <ebourg@apache.org> - 2015-10-16 23:40 +0200
      Re: Help getting missing classes found by prottest Andreas Tille <andreas@an3as.eu> - 2015-10-17 00:30 +0200
        Re: Help getting missing classes found by prottest Andreas Tille <andreas@an3as.eu> - 2015-10-17 09:00 +0200
          Re: Help getting missing classes found by prottest Markus Koschany <apo@gambaru.de> - 2015-10-17 16:20 +0200
  Re: [Debian-med-packaging] Help getting missing classes found by prottest Sascha Steinbiss <satta@tetrinetsucht.de> - 2015-10-16 23:40 +0200

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