Groups > linux.debian.maint.java > #8623

Re: Need a (hopefully) last kick for finalising qualimap

From	Andreas Tille <andreas@an3as.eu>
Newsgroups	linux.debian.maint.java
Subject	Re: Need a (hopefully) last kick for finalising qualimap
Date	2015-12-02 17:20 +0100
Message-ID	<qBiim-161-5@gated-at.bofh.it> (permalink)
References	<qBey5-72N-5@gated-at.bofh.it> <qBeHN-76w-27@gated-at.bofh.it> <qBgJz-8no-9@gated-at.bofh.it>
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Hi again,

I became better now by patching pom.xml further and ejml is found now.

But why the local files coming with the source are not found is
mysterious to me ... :-(

Kind regards

       Andreas.

On Wed, Dec 02, 2015 at 03:37:21PM +0100, Andreas Tille wrote:
> Hi Emmanuel,
> 
> On Wed, Dec 02, 2015 at 01:25:24PM +0100, Emmanuel Bourg wrote:
> > Le 2/12/2015 13:18, Andreas Tille a écrit :
> > > "only dependency with system scope can specify systemPath."
> > 
> > Just add <scope>system</scope> where you added <systemPath>.
> > 
> > *kick*
> 
> Done (and pushed) and better but seems not to be final. :-(
> 
> 
> [INFO] ------------------------------------------------------------------------
> [ERROR] BUILD ERROR
> [INFO] ------------------------------------------------------------------------
> [INFO] Failed to resolve artifact.
>         
> Missing:
> ----------
> 1) org.bioinfo:bioinfo-ngs:jar:debian
>         
>   Try downloading the file manually from the project website.
> 
>   Then, install it using the command:.
>       mvn install:install-file -DgroupId=org.bioinfo -DartifactId=bioinfo-ngs -Dversion=debian -Dpackaging=jar -Dfile=/path/to/file
> 
>   Alternatively, if you host your own repository you can deploy the file there:.
>       mvn deploy:deploy-file -DgroupId=org.bioinfo -DartifactId=bioinfo-ngs -Dversion=debian -Dpackaging=jar -Dfile=/path/to/file -Durl=[url] -DrepositoryId=[id]
> 
>   Path to dependency:.
>   	1) org.bioinfo.ngs:qualimap:jar:2.1.3-dev
>   	2) org.bioinfo:bioinfo-ngs:jar:debian
> 
> 2) org.bioinfo:bioinfo-commons:jar:debian
> 
>   Try downloading the file manually from the project website.
> 
>   Then, install it using the command:.
>       mvn install:install-file -DgroupId=org.bioinfo -DartifactId=bioinfo-commons -Dversion=debian -Dpackaging=jar -Dfile=/path/to/file
> 
>   Alternatively, if you host your own repository you can deploy the file there:.
>       mvn deploy:deploy-file -DgroupId=org.bioinfo -DartifactId=bioinfo-commons -Dversion=debian -Dpackaging=jar -Dfile=/path/to/file -Durl=[url] -DrepositoryId=[id]
> 
>   Path to dependency:.
>   	1) org.bioinfo.ngs:qualimap:jar:2.1.3-dev
>   	2) org.bioinfo:bioinfo-commons:jar:debian
>         
> 3) org.ejml:ejml:jar:debian
>         
>   Try downloading the file manually from the project website.
> 
>   Then, install it using the command:.
>       mvn install:install-file -DgroupId=org.ejml -DartifactId=ejml -Dversion=debian -Dpackaging=jar -Dfile=/path/to/file
> 
>   Alternatively, if you host your own repository you can deploy the file there:.
>       mvn deploy:deploy-file -DgroupId=org.ejml -DartifactId=ejml -Dversion=debian -Dpackaging=jar -Dfile=/path/to/file -Durl=[url] -DrepositoryId=[id]
> 
>   Path to dependency:.
>   	1) org.bioinfo.ngs:qualimap:jar:2.1.3-dev
>   	2) org.ejml:ejml:jar:debian
> 
> 
> 1)+2) are the "own" java files inside the source tree and 3) should come
> from /usr/share/java/EJML.jar (libejml-java package).
> 
> Seems I did not git it right yet. :-(
> 
> Sorry for my constant bothering here
> 
>       Andreas.
> 
> -- 
> http://fam-tille.de

-- 
http://fam-tille.de

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Thread

Need a (hopefully) last kick for finalising qualimap Andreas Tille <andreas@an3as.eu> - 2015-12-02 13:20 +0100
  Re: Need a (hopefully) last kick for finalising qualimap Emmanuel Bourg <ebourg@apache.org> - 2015-12-02 13:30 +0100
    Re: Need a (hopefully) last kick for finalising qualimap Andreas Tille <andreas@an3as.eu> - 2015-12-02 15:40 +0100
      Re: Need a (hopefully) last kick for finalising qualimap Andreas Tille <andreas@an3as.eu> - 2015-12-02 17:20 +0100
        Re: Need a (hopefully) last kick for finalising qualimap Emmanuel Bourg <ebourg@apache.org> - 2015-12-02 17:50 +0100
          Re: Need a (hopefully) last kick for finalising qualimap Andreas Tille <andreas@an3as.eu> - 2015-12-02 18:20 +0100
            Re: Need a (hopefully) last kick for finalising qualimap Emmanuel Bourg <ebourg@apache.org> - 2015-12-02 18:50 +0100
              Re: Need a (hopefully) last kick for finalising qualimap Andreas Tille <andreas@an3as.eu> - 2015-12-02 22:30 +0100
                Re: Need a (hopefully) last kick for finalising qualimap Emmanuel Bourg <ebourg@apache.org> - 2015-12-02 22:50 +0100
                Re: Need a (hopefully) last kick for finalising qualimap Andreas Tille <andreas@an3as.eu> - 2015-12-03 11:20 +0100

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