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Groups > linux.debian.bugs.dist > #1012649
| From | Andreas Tille <andreas@an3as.eu> |
|---|---|
| Newsgroups | linux.debian.bugs.dist |
| Subject | Bug#961013: diamond-aligner: Diamond faill with the error: Assertion `index >= 0 && index < size()' failed. |
| Date | 2020-06-04 16:40 +0200 |
| Message-ID | <AdZce-7GD-29@gated-at.bofh.it> (permalink) |
| References | (7 earlier) <AdF3Q-3OL-15@gated-at.bofh.it> <AdF3Q-3OL-17@gated-at.bofh.it> <AdF3Q-3OL-1@gated-at.bofh.it> <A88Bz-7kc-5@gated-at.bofh.it> <AdF3Q-3OL-1@gated-at.bofh.it> |
| Organization | linux.* mail to news gateway |
On Wed, Jun 03, 2020 at 10:36:39PM +0530, Pranav Ballaney wrote:
> I've narrowed the issue down to one (or a few) sequences. Basically this
> error occurs whenever a query sequence is less than five nucleotides (and
> is independent of the length of sequences in the database file). Besides,
> it's not specific to the Debian package. I encountered the same error when
> I compiled from the upstream source, but it went away when I downloaded the
> compiled binary, so it's probably something to do with the way it is
> compiled.
>
> I've reported this on the Github issue page here
> <https://github.com/bbuchfink/diamond/issues/351> along with the smallest
> dataset that can be used to reproduce this issue. Maybe now we wait for
> upstream to take a look?
Thanks a lot. That sounds extremely helpful and promising.
Kind regards
Andreas.
--
http://fam-tille.de
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Bug#961013: diamond-aligner: Diamond faill with the error: Assertion `index >= 0 && index < size()' failed. Marcelo Luiz de Laia <marcelolaia@gmail.com> - 2020-05-19 13:30 +0200
Bug#961013: [Debian-med-packaging] Bug#961013: diamond-aligner: Diamond faill with the error: Assertion `index >= 0 && index < size()' failed. olivier sallou <olivier.sallou@irisa.fr> - 2020-05-19 14:00 +0200
Bug#961013: diamond-aligner: Diamond faill with the error: Assertion `index >= 0 && index < size()' failed. Andreas Tille <tille@debian.org> - 2020-05-19 14:10 +0200
Bug#961013: diamond-aligner: Diamond faill with the error: Assertion `index >= 0 && index < size()' failed. Pranav Ballaney <ballaneypranav@gmail.com> - 2020-06-03 19:10 +0200
Bug#961013: diamond-aligner: Diamond faill with the error: Assertion `index >= 0 && index < size()' failed. Andreas Tille <andreas@an3as.eu> - 2020-06-04 16:40 +0200
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