Groups | Search | Server Info | Keyboard shortcuts | Login | Register [http] [https] [nntp] [nntps]

Groups > comp.lang.python > #107339 > unrolled thread

Failed install scipy lib

Back to article view | Back to comp.lang.python

Contents

  Failed install scipy lib liran.maymoni@gmail.com - 2016-04-19 08:51 -0700
    Re: Failed install scipy lib liran.maymoni@gmail.com - 2016-04-19 08:55 -0700
    Re: Failed install scipy lib Oscar Benjamin <oscar.j.benjamin@gmail.com> - 2016-04-19 18:05 +0100
      Re: Failed install scipy lib liran.maymoni@gmail.com - 2016-04-19 11:18 -0700
        Re: Failed install scipy lib Andrew Farrell <amfarrell@mit.edu> - 2016-04-19 14:10 -0500
    Re: Failed install scipy lib eryk sun <eryksun@gmail.com> - 2016-04-19 13:20 -0500
      Re: Failed install scipy lib liran.maymoni@gmail.com - 2016-04-20 04:08 -0700
        Re: Failed install scipy lib liran.maymoni@gmail.com - 2016-04-20 04:30 -0700
          Re: Failed install scipy lib Oscar Benjamin <oscar.j.benjamin@gmail.com> - 2016-04-20 14:04 +0100
          Re: Failed install scipy lib Gonzalo V <gvm2121@gmail.com> - 2016-04-20 12:03 -0300
          Re: Failed install scipy lib eryk sun <eryksun@gmail.com> - 2016-04-20 21:05 -0500

#107339 — Failed install scipy lib

Hello,
i'm trying to use:
"py -m pip install scipy"
and after couple of lines a get an error saying:

Command "C:\Users\Liran\AppData\Local\Programs\Python\Python35-32\python.exe -u -c "import setuptools, tokenize;__file__='C:\\Users\\Liran\\AppData\\Local\\Temp\\pip-build-er8bfsou\\scipy\\setup.py';exec(compile(getattr(tokenize, 'open', open)(__file__).read().replace('\r\n', '\n'), __file__, 'exec'))" install --record C:\Users\Liran\AppData\Local\Temp\pip-4505t4eq-record\install-record.txt --single-version-externally-managed --compile" failed with error code 1 in C:\Users\Liran\AppData\Local\Temp\pip-build-er8bfsou\scipy

What is the problem?

[toc] | [next] | [standalone]

#107340

This is the full Log:

C:\Users\Liran>py -m pip install scipy
Collecting scipy
  Using cached scipy-0.17.0.tar.gz
Installing collected packages: scipy
  Running setup.py install for scipy ... error
    Complete output from command C:\Users\Liran\AppData\Local\Programs\Python\Python35-32\python.exe -u -c "import setuptools, tokenize;__file__='C:\\Users\\Liran\\AppData\\Local\\Temp\\pip-build-47xsb0ek\\scipy\\setup.py';exec(compile(getattr(tokenize, 'open', open)(__file__).read().replace('\r\n', '\n'), __file__, 'exec'))" install --record C:\Users\Liran\AppData\Local\Temp\pip-ybdtaj2y-record\install-record.txt --single-version-externally-managed --compile:
    lapack_opt_info:
    openblas_lapack_info:
      libraries openblas not found in ['C:\\Users\\Liran\\AppData\\Local\\Programs\\Python\\Python35-32\\lib', 'C:\\', 'C:\\Users\\Liran\\AppData\\Local\\Programs\\Python\\Python35-32\\libs']
      NOT AVAILABLE

    lapack_mkl_info:
    mkl_info:
      libraries mkl,vml,guide not found in ['C:\\Users\\Liran\\AppData\\Local\\Programs\\Python\\Python35-32\\lib', 'C:\\', 'C:\\Users\\Liran\\AppData\\Local\\Programs\\Python\\Python35-32\\libs']
      NOT AVAILABLE

      NOT AVAILABLE

    atlas_3_10_threads_info:
    Setting PTATLAS=ATLAS
    C:\Users\Liran\AppData\Local\Programs\Python\Python35-32\lib\site-packages\numpy\distutils\system_info.py:633: UserWarning: Specified path C:\projects\windows-wheel-builder\atlas-builds\atlas-3.10.1-sse2-32\lib is invalid.
      warnings.warn('Specified path %s is invalid.' % d)
    <class 'numpy.distutils.system_info.atlas_3_10_threads_info'>
      NOT AVAILABLE

    atlas_3_10_info:
    <class 'numpy.distutils.system_info.atlas_3_10_info'>
      NOT AVAILABLE

    atlas_threads_info:
    Setting PTATLAS=ATLAS
    <class 'numpy.distutils.system_info.atlas_threads_info'>
      NOT AVAILABLE

    atlas_info:
    <class 'numpy.distutils.system_info.atlas_info'>
      NOT AVAILABLE

    C:\Users\Liran\AppData\Local\Programs\Python\Python35-32\lib\site-packages\numpy\distutils\system_info.py:1542: UserWarning:
        Atlas (http://math-atlas.sourceforge.net/) libraries not found.
        Directories to search for the libraries can be specified in the
        numpy/distutils/site.cfg file (section [atlas]) or by setting
        the ATLAS environment variable.
      warnings.warn(AtlasNotFoundError.__doc__)
    lapack_info:
      libraries lapack not found in ['C:\\Users\\Liran\\AppData\\Local\\Programs\\Python\\Python35-32\\lib', 'C:\\', 'C:\\Users\\Liran\\AppData\\Local\\Programs\\Python\\Python35-32\\libs']
      NOT AVAILABLE

    C:\Users\Liran\AppData\Local\Programs\Python\Python35-32\lib\site-packages\numpy\distutils\system_info.py:1553: UserWarning:
        Lapack (http://www.netlib.org/lapack/) libraries not found.
        Directories to search for the libraries can be specified in the
        numpy/distutils/site.cfg file (section [lapack]) or by setting
        the LAPACK environment variable.
      warnings.warn(LapackNotFoundError.__doc__)
    lapack_src_info:
      NOT AVAILABLE

    C:\Users\Liran\AppData\Local\Programs\Python\Python35-32\lib\site-packages\numpy\distutils\system_info.py:1556: UserWarning:
        Lapack (http://www.netlib.org/lapack/) sources not found.
        Directories to search for the sources can be specified in the
        numpy/distutils/site.cfg file (section [lapack_src]) or by setting
        the LAPACK_SRC environment variable.
      warnings.warn(LapackSrcNotFoundError.__doc__)
      NOT AVAILABLE

    Running from scipy source directory.
    Traceback (most recent call last):
      File "<string>", line 1, in <module>
      File "C:\Users\Liran\AppData\Local\Temp\pip-build-47xsb0ek\scipy\setup.py", line 265, in <module>
        setup_package()
      File "C:\Users\Liran\AppData\Local\Temp\pip-build-47xsb0ek\scipy\setup.py", line 262, in setup_package
        setup(**metadata)
      File "C:\Users\Liran\AppData\Local\Programs\Python\Python35-32\lib\site-packages\numpy\distutils\core.py", line 135, in setup
        config = configuration()
      File "C:\Users\Liran\AppData\Local\Temp\pip-build-47xsb0ek\scipy\setup.py", line 182, in configuration
        config.add_subpackage('scipy')
      File "C:\Users\Liran\AppData\Local\Programs\Python\Python35-32\lib\site-packages\numpy\distutils\misc_util.py", line 1003, in add_subpackage
        caller_level = 2)
      File "C:\Users\Liran\AppData\Local\Programs\Python\Python35-32\lib\site-packages\numpy\distutils\misc_util.py", line 972, in get_subpackage
        caller_level = caller_level + 1)
      File "C:\Users\Liran\AppData\Local\Programs\Python\Python35-32\lib\site-packages\numpy\distutils\misc_util.py", line 909, in _get_configuration_from_setup_py
        config = setup_module.configuration(*args)
      File "scipy\setup.py", line 15, in configuration
        config.add_subpackage('linalg')
      File "C:\Users\Liran\AppData\Local\Programs\Python\Python35-32\lib\site-packages\numpy\distutils\misc_util.py", line 1003, in add_subpackage
        caller_level = 2)
      File "C:\Users\Liran\AppData\Local\Programs\Python\Python35-32\lib\site-packages\numpy\distutils\misc_util.py", line 972, in get_subpackage
        caller_level = caller_level + 1)
      File "C:\Users\Liran\AppData\Local\Programs\Python\Python35-32\lib\site-packages\numpy\distutils\misc_util.py", line 909, in _get_configuration_from_setup_py
        config = setup_module.configuration(*args)
      File "scipy\linalg\setup.py", line 20, in configuration
        raise NotFoundError('no lapack/blas resources found')
    numpy.distutils.system_info.NotFoundError: no lapack/blas resources found

    ----------------------------------------
Command "C:\Users\Liran\AppData\Local\Programs\Python\Python35-32\python.exe -u -c "import setuptools, tokenize;__file__='C:\\Users\\Liran\\AppData\\Local\\Temp\\pip-build-47xsb0ek\\scipy\\setup.py';exec(compile(getattr(tokenize, 'open', open)(__file__).read().replace('\r\n', '\n'), __file__, 'exec'))" install --record C:\Users\Liran\AppData\Local\Temp\pip-ybdtaj2y-record\install-record.txt --single-version-externally-managed --compile" failed with error code 1 in C:\Users\Liran\AppData\Local\Temp\pip-build-47xsb0ek\scipy\

[toc] | [prev] | [next] | [standalone]

#107347

On 19 Apr 2016 17:01, <liran.maymoni@gmail.com> wrote:
>
> Hello,
> i'm trying to use:
> "py -m pip install scipy"
> and after couple of lines a get an error saying:

I thought that binary wheels for scipy would be available on pypi for each
OS now. Try updating pip and then using it to install scipy.

I'm not on Windows to check myself though I'm afraid.

--
Oscar

[toc] | [prev] | [next] | [standalone]

#107355

On Tuesday, April 19, 2016 at 8:06:06 PM UTC+3, Oscar Benjamin wrote:
> On 19 Apr 2016 17:01, <liran.maymoni@gmail.com> wrote:
> >
> > Hello,
> > i'm trying to use:
> > "py -m pip install scipy"
> > and after couple of lines a get an error saying:
> 
> I thought that binary wheels for scipy would be available on pypi for each
> OS now. Try updating pip and then using it to install scipy.
> 
> I'm not on Windows to check myself though I'm afraid.
> 
> --
> Oscar

I tried.
updated pip but still having the same problem

[toc] | [prev] | [next] | [standalone]

#107361

Hi Liran,

If your goal is simply to install SciPy on windows and not have to worry
about python packaging, your best bet is to go ahead and install Anaconda
<https://docs.continuum.io/anaconda/install#anaconda-for-windows-install>,
which comes with SciPy and a bunch of other libraries for scientific
computing.

If you don't want all the other libraries and only want scipy, you can
also install
miniconda
<http://conda.pydata.org/docs/install/quick.html#windows-miniconda-install> and
then run

conda install scipy

You can also create an isolated environment with

conda create --name scipy35 python=3.5 scipy
activate scipy35

All the best,
Andrew

On Tue, Apr 19, 2016 at 1:18 PM, <liran.maymoni@gmail.com> wrote:

> On Tuesday, April 19, 2016 at 8:06:06 PM UTC+3, Oscar Benjamin wrote:
> > On 19 Apr 2016 17:01, <liran.maymoni@gmail.com> wrote:
> > >
> > > Hello,
> > > i'm trying to use:
> > > "py -m pip install scipy"
> > > and after couple of lines a get an error saying:
> >
> > I thought that binary wheels for scipy would be available on pypi for
> each
> > OS now. Try updating pip and then using it to install scipy.
> >
> > I'm not on Windows to check myself though I'm afraid.
> >
> > --
> > Oscar
>
> I tried.
> updated pip but still having the same problem
> --
> https://mail.python.org/mailman/listinfo/python-list
>

[toc] | [prev] | [next] | [standalone]

#107356

On Tue, Apr 19, 2016 at 12:05 PM, Oscar Benjamin
<oscar.j.benjamin@gmail.com> wrote:
> On 19 Apr 2016 17:01, <liran.maymoni@gmail.com> wrote:
>>
>> i'm trying to use:
>> "py -m pip install scipy"
>> and after couple of lines a get an error saying:
>
> I thought that binary wheels for scipy would be available on pypi for each
> OS now. Try updating pip and then using it to install scipy.

PyPI only has Windows wheels for NumPy, not SciPy. You can use
Christoph Gohlke's unofficial packages:

http://www.lfd.uci.edu/~gohlke/pythonlibs/#numpy
http://www.lfd.uci.edu/~gohlke/pythonlibs/#scipy

[toc] | [prev] | [next] | [standalone]

#107404

On Tuesday, April 19, 2016 at 9:21:42 PM UTC+3, eryk sun wrote:
> On Tue, Apr 19, 2016 at 12:05 PM, Oscar Benjamin
> <oscar.j.benjamin@gmail.com> wrote:
> > On 19 Apr 2016 17:01, <liran.maymoni@gmail.com> wrote:
> >>
> >> i'm trying to use:
> >> "py -m pip install scipy"
> >> and after couple of lines a get an error saying:
> >
> > I thought that binary wheels for scipy would be available on pypi for each
> > OS now. Try updating pip and then using it to install scipy.
> 
> PyPI only has Windows wheels for NumPy, not SciPy. You can use
> Christoph Gohlke's unofficial packages:
> 
> http://www.lfd.uci.edu/~gohlke/pythonlibs/#numpy
> http://www.lfd.uci.edu/~gohlke/pythonlibs/#scipy

Tried to install thouse packages and i'm getting the error:

scipy-0.17.0-cp35-none-win_amd64.whl is not a supported wheel on this platform.

i've also tried it with the versions:
scipy-0.17.0-cp27-none-win_amd64.whl is not a supported wheel on this platform.

scipy-0.17.0-cp34-none-win_amd64.whl is not a supported wheel on this platform.


I'm using win 10 x64. And python 3.5

[toc] | [prev] | [next] | [standalone]

#107405

On Wednesday, April 20, 2016 at 2:09:10 PM UTC+3, liran....@gmail.com wrote:
> On Tuesday, April 19, 2016 at 9:21:42 PM UTC+3, eryk sun wrote:
> > On Tue, Apr 19, 2016 at 12:05 PM, Oscar Benjamin
> > <oscar.j.benjamin@gmail.com> wrote:
> > > On 19 Apr 2016 17:01, <liran.maymoni@gmail.com> wrote:
> > >>
> > >> i'm trying to use:
> > >> "py -m pip install scipy"
> > >> and after couple of lines a get an error saying:
> > >
> > > I thought that binary wheels for scipy would be available on pypi for each
> > > OS now. Try updating pip and then using it to install scipy.
> > 
> > PyPI only has Windows wheels for NumPy, not SciPy. You can use
> > Christoph Gohlke's unofficial packages:
> > 
> > http://www.lfd.uci.edu/~gohlke/pythonlibs/#numpy
> > http://www.lfd.uci.edu/~gohlke/pythonlibs/#scipy
> 
> Tried to install thouse packages and i'm getting the error:
> 
> scipy-0.17.0-cp35-none-win_amd64.whl is not a supported wheel on this platform.
> 
> i've also tried it with the versions:
> scipy-0.17.0-cp27-none-win_amd64.whl is not a supported wheel on this platform.
> 
> scipy-0.17.0-cp34-none-win_amd64.whl is not a supported wheel on this platform.
> 
> 
> I'm using win 10 x64. And python 3.5

Ok i got it to install with the version:
scipy-0.17.0-cp35-none-win32.whl
I've also install this version:
numpy-1.11.0+mkl-cp35-cp35m-win32.whl

But when i try to run:
>>> from scipy.stats.stats import pearsonr

I get this error:
Traceback (most recent call last):
  File "<pyshell#3>", line 1, in <module>
    from scipy.stats.stats import pearsonr
  File "C:\Users\Liran\AppData\Local\Programs\Python\Python35-32\lib\site-packages\scipy\stats\__init__.py", line 338, in <module>
    from .stats import *
  File "C:\Users\Liran\AppData\Local\Programs\Python\Python35-32\lib\site-packages\scipy\stats\stats.py", line 180, in <module>
    import scipy.special as special
  File "C:\Users\Liran\AppData\Local\Programs\Python\Python35-32\lib\site-packages\scipy\special\__init__.py", line 627, in <module>
    from ._ufuncs import *
  File "scipy\special\_ufuncs.pyx", line 1, in init scipy.special._ufuncs (scipy\special\_ufuncs.c:26242)
ImportError: DLL load failed: The specified module could not be found.


:(

[toc] | [prev] | [next] | [standalone]

#107409

On 20 April 2016 at 12:30,  <liran.maymoni@gmail.com> wrote:
> On Wednesday, April 20, 2016 at 2:09:10 PM UTC+3, liran....@gmail.com wrote:
>> On Tuesday, April 19, 2016 at 9:21:42 PM UTC+3, eryk sun wrote:
>> > On Tue, Apr 19, 2016 at 12:05 PM, Oscar Benjamin
>> > <oscar.j.benjamin@gmail.com> wrote:
>> > > On 19 Apr 2016 17:01, <liran.maymoni@gmail.com> wrote:
>> > >>
>> > >> i'm trying to use:
>> > >> "py -m pip install scipy"
>> > >> and after couple of lines a get an error saying:
>> > >
>> > > I thought that binary wheels for scipy would be available on pypi for each
>> > > OS now. Try updating pip and then using it to install scipy.
>> >
>> > PyPI only has Windows wheels for NumPy, not SciPy. You can use
>> > Christoph Gohlke's unofficial packages:
>> >
>> > http://www.lfd.uci.edu/~gohlke/pythonlibs/#numpy
>> > http://www.lfd.uci.edu/~gohlke/pythonlibs/#scipy
>>
>> Tried to install thouse packages and i'm getting the error:
>>
>> scipy-0.17.0-cp35-none-win_amd64.whl is not a supported wheel on this platform.
>>
>> i've also tried it with the versions:
>> scipy-0.17.0-cp27-none-win_amd64.whl is not a supported wheel on this platform.
>>
>> scipy-0.17.0-cp34-none-win_amd64.whl is not a supported wheel on this platform.
>>
>>
>> I'm using win 10 x64. And python 3.5
>
> Ok i got it to install with the version:
> scipy-0.17.0-cp35-none-win32.whl
> I've also install this version:
> numpy-1.11.0+mkl-cp35-cp35m-win32.whl
>
> But when i try to run:
>>>> from scipy.stats.stats import pearsonr
>
> I get this error:
> Traceback (most recent call last):
>   File "<pyshell#3>", line 1, in <module>
>     from scipy.stats.stats import pearsonr
>   File "C:\Users\Liran\AppData\Local\Programs\Python\Python35-32\lib\site-packages\scipy\stats\__init__.py", line 338, in <module>
>     from .stats import *
>   File "C:\Users\Liran\AppData\Local\Programs\Python\Python35-32\lib\site-packages\scipy\stats\stats.py", line 180, in <module>
>     import scipy.special as special
>   File "C:\Users\Liran\AppData\Local\Programs\Python\Python35-32\lib\site-packages\scipy\special\__init__.py", line 627, in <module>
>     from ._ufuncs import *
>   File "scipy\special\_ufuncs.pyx", line 1, in init scipy.special._ufuncs (scipy\special\_ufuncs.c:26242)
> ImportError: DLL load failed: The specified module could not be found.

Maybe this is the problem:

http://stackoverflow.com/questions/36489487/error-of-import-scipy-stats-for-windows-7

--
Oscar

[toc] | [prev] | [next] | [standalone]

#107417

oscar
instálate mejor anaconda y listo.

Saludos,
Gonzalo

2016-04-20 10:04 GMT-03:00 Oscar Benjamin <oscar.j.benjamin@gmail.com>:

> On 20 April 2016 at 12:30,  <liran.maymoni@gmail.com> wrote:
> > On Wednesday, April 20, 2016 at 2:09:10 PM UTC+3, liran....@gmail.com
> wrote:
> >> On Tuesday, April 19, 2016 at 9:21:42 PM UTC+3, eryk sun wrote:
> >> > On Tue, Apr 19, 2016 at 12:05 PM, Oscar Benjamin
> >> > <oscar.j.benjamin@gmail.com> wrote:
> >> > > On 19 Apr 2016 17:01, <liran.maymoni@gmail.com> wrote:
> >> > >>
> >> > >> i'm trying to use:
> >> > >> "py -m pip install scipy"
> >> > >> and after couple of lines a get an error saying:
> >> > >
> >> > > I thought that binary wheels for scipy would be available on pypi
> for each
> >> > > OS now. Try updating pip and then using it to install scipy.
> >> >
> >> > PyPI only has Windows wheels for NumPy, not SciPy. You can use
> >> > Christoph Gohlke's unofficial packages:
> >> >
> >> > http://www.lfd.uci.edu/~gohlke/pythonlibs/#numpy
> >> > http://www.lfd.uci.edu/~gohlke/pythonlibs/#scipy
> >>
> >> Tried to install thouse packages and i'm getting the error:
> >>
> >> scipy-0.17.0-cp35-none-win_amd64.whl is not a supported wheel on this
> platform.
> >>
> >> i've also tried it with the versions:
> >> scipy-0.17.0-cp27-none-win_amd64.whl is not a supported wheel on this
> platform.
> >>
> >> scipy-0.17.0-cp34-none-win_amd64.whl is not a supported wheel on this
> platform.
> >>
> >>
> >> I'm using win 10 x64. And python 3.5
> >
> > Ok i got it to install with the version:
> > scipy-0.17.0-cp35-none-win32.whl
> > I've also install this version:
> > numpy-1.11.0+mkl-cp35-cp35m-win32.whl
> >
> > But when i try to run:
> >>>> from scipy.stats.stats import pearsonr
> >
> > I get this error:
> > Traceback (most recent call last):
> >   File "<pyshell#3>", line 1, in <module>
> >     from scipy.stats.stats import pearsonr
> >   File
> "C:\Users\Liran\AppData\Local\Programs\Python\Python35-32\lib\site-packages\scipy\stats\__init__.py",
> line 338, in <module>
> >     from .stats import *
> >   File
> "C:\Users\Liran\AppData\Local\Programs\Python\Python35-32\lib\site-packages\scipy\stats\stats.py",
> line 180, in <module>
> >     import scipy.special as special
> >   File
> "C:\Users\Liran\AppData\Local\Programs\Python\Python35-32\lib\site-packages\scipy\special\__init__.py",
> line 627, in <module>
> >     from ._ufuncs import *
> >   File "scipy\special\_ufuncs.pyx", line 1, in init
> scipy.special._ufuncs (scipy\special\_ufuncs.c:26242)
> > ImportError: DLL load failed: The specified module could not be found.
>
> Maybe this is the problem:
>
>
> http://stackoverflow.com/questions/36489487/error-of-import-scipy-stats-for-windows-7
>
> --
> Oscar
> --
> https://mail.python.org/mailman/listinfo/python-list
>

[toc] | [prev] | [next] | [standalone]

#107431

On Wed, Apr 20, 2016 at 8:04 AM, Oscar Benjamin
<oscar.j.benjamin@gmail.com> wrote:
> On 20 April 2016 at 12:30,  <liran.maymoni@gmail.com> wrote:
>
>>     from ._ufuncs import *
>>   File "scipy\special\_ufuncs.pyx", line 1, in init scipy.special._ufuncs (scipy\special\_ufuncs.c:26242)
>> ImportError: DLL load failed: The specified module could not be found.
>
> Maybe this is the problem:
>
> http://stackoverflow.com/questions/36489487/error-of-import-scipy-stats-for-windows-7

Here's the link for the VC++ Redistributable for VS 2015. Try
installing the 32-bit version.

https://www.microsoft.com/en-us/download/details.aspx?id=48145

[toc] | [prev] | [standalone]

Back to top | Article view | comp.lang.python

csiph-web