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Groups > comp.lang.python > #45465 > unrolled thread

How to write fast into a file in python?

Started bylokeshkoppaka@gmail.com
First post2013-05-16 20:20 -0700
Last post2013-05-19 12:41 +0300
Articles 20 on this page of 30 — 12 participants

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  How to write fast into a file in python? lokeshkoppaka@gmail.com - 2013-05-16 20:20 -0700
    Re: How to write fast into a file in python? Steven D'Aprano <steve+comp.lang.python@pearwood.info> - 2013-05-17 03:51 +0000
    Re: How to write fast into a file in python? lokeshkoppaka@gmail.com - 2013-05-16 21:35 -0700
      Re: How to write fast into a file in python? Dave Angel <davea@davea.name> - 2013-05-17 07:58 -0400
      RE: How to write fast into a file in python? Carlos Nepomuceno <carlosnepomuceno@outlook.com> - 2013-05-17 18:20 +0300
        Re: How to write fast into a file in python? Steven D'Aprano <steve+comp.lang.python@pearwood.info> - 2013-05-17 16:42 +0000
          RE: How to write fast into a file in python? Carlos Nepomuceno <carlosnepomuceno@outlook.com> - 2013-05-17 20:25 +0300
        Re: How to write fast into a file in python? Steven D'Aprano <steve+comp.lang.python@pearwood.info> - 2013-05-17 17:47 +0000
          RE: How to write fast into a file in python? Carlos Nepomuceno <carlosnepomuceno@outlook.com> - 2013-05-17 21:18 +0300
            Re: How to write fast into a file in python? Steven D'Aprano <steve+comp.lang.python@pearwood.info> - 2013-05-18 04:01 +0000
              Re: How to write fast into a file in python? Chris Angelico <rosuav@gmail.com> - 2013-05-18 15:28 +1000
              Re: How to write fast into a file in python? 88888 Dihedral <dihedral88888@googlemail.com> - 2013-05-18 04:09 -0700
          RE: How to write fast into a file in python? Carlos Nepomuceno <carlosnepomuceno@outlook.com> - 2013-05-17 21:33 +0300
          RE: How to write fast into a file in python? Fábio Santos <fabiosantosart@gmail.com> - 2013-05-18 08:49 +0100
          Re: How to write fast into a file in python? Chris Angelico <rosuav@gmail.com> - 2013-05-19 00:29 +1000
          RE: How to write fast into a file in python? Carlos Nepomuceno <carlosnepomuceno@outlook.com> - 2013-05-18 20:00 +0300
            Re: How to write fast into a file in python? Tim Roberts <timr@probo.com> - 2013-05-19 19:04 -0700
          Re: How to write fast into a file in python? Dennis Lee Bieber <wlfraed@ix.netcom.com> - 2013-05-18 15:14 -0400
            Re: How to write fast into a file in python? Roy Smith <roy@panix.com> - 2013-05-18 15:37 -0400
            Re: How to write fast into a file in python? Steven D'Aprano <steve+comp.lang.python@pearwood.info> - 2013-05-18 22:23 +0000
          Re: How to write fast into a file in python? Fábio Santos <fabiosantosart@gmail.com> - 2013-05-18 22:19 +0100
          Re: How to write fast into a file in python? Dave Angel <davea@davea.name> - 2013-05-18 22:41 -0400
          RE: How to write fast into a file in python? Carlos Nepomuceno <carlosnepomuceno@outlook.com> - 2013-05-19 06:53 +0300
          Re: How to write fast into a file in python? MRAB <python@mrabarnett.plus.com> - 2013-05-19 16:44 +0100
          RE: How to write fast into a file in python? Carlos Nepomuceno <carlosnepomuceno@outlook.com> - 2013-05-20 13:34 +0300
      Re: How to write fast into a file in python? Dan Stromberg <drsalists@gmail.com> - 2013-05-18 12:38 -0700
      RE: How to write fast into a file in python? Carlos Nepomuceno <carlosnepomuceno@outlook.com> - 2013-05-19 08:31 +0300
      RE: How to write fast into a file in python? Carlos Nepomuceno <carlosnepomuceno@outlook.com> - 2013-05-19 08:42 +0300
      Re: How to write fast into a file in python? Chris Angelico <rosuav@gmail.com> - 2013-05-19 19:21 +1000
      RE: How to write fast into a file in python? Carlos Nepomuceno <carlosnepomuceno@outlook.com> - 2013-05-19 12:41 +0300

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#45465 — How to write fast into a file in python?

Fromlokeshkoppaka@gmail.com
Date2013-05-16 20:20 -0700
SubjectHow to write fast into a file in python?
Message-ID<e9dcd255-b892-40a0-ae6b-0995a61a270f@googlegroups.com>

I need to write numbers into a file upto 50mb and it should be fast
can any one help me how to do that?
i had written the following code..
-----------------------------------------------------------------------------------------------------------
def create_file_numbers_old(filename, size):
start = time.clock()

value = 0
with open(filename, "w") as f:
while f.tell()< size:
f.write("{0}\n".format(value))
value += 1

end = time.clock()

print "time taken to write a file of size", size, " is ", (end -start), "seconds \n"
------------------------------------------------------------------------------------------------------------------
it takes about 20sec i need 5 to 10 times less than that.

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#45466

FromSteven D'Aprano <steve+comp.lang.python@pearwood.info>
Date2013-05-17 03:51 +0000
Message-ID<5195a939$0$29997$c3e8da3$5496439d@news.astraweb.com>
In reply to#45465
On Thu, 16 May 2013 20:20:26 -0700, lokeshkoppaka wrote:

> I need to write numbers into a file upto 50mb and it should be fast can
> any one help me how to do that?
> i had written the following code..
> ----------------------------------------------------------------------
> def create_file_numbers_old(filename, size): start = time.clock()
> 
> value = 0
> with open(filename, "w") as f:
> while f.tell()< size:
> f.write("{0}\n".format(value))
> value += 1
> 
> end = time.clock()
> 
> print "time taken to write a file of size", size, " is ", (end -start),
> "seconds \n"
> --------------------------------------------------------------------
> it takes about 20sec i need 5 to 10 times less than that.


20 seconds to write how many numbers? If you are doing

create_file_numbers_old(filename, 5)

then 20 seconds is really slow. But if you are doing:

create_file_numbers_old(filename, 50000000000000)

then 20 seconds is amazingly fast.


Try this instead, it may be a little faster:


def create_file_numbers_old(filename, size):
    count = value = 0
    with open(filename, 'w') as f:
        while count < size:
            s = '%d\n' % value
            f.write(s)
            count += len(s)
            value += 1
            

If this is still too slow, you can try three other tactics:

1) pre-calculate the largest integer that will fit in `size` bytes, then 
use a for-loop instead of a while loop:

    maxn = calculation(...)
    with open(filename, 'w') as f:
        for i in xrange(maxn):
            f.write('%d\n' % i)


2) Write an extension module in C that writes to the file.

3) Get a faster hard drive, and avoid writing over a network.


-- 
Steven

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#45467

Fromlokeshkoppaka@gmail.com
Date2013-05-16 21:35 -0700
Message-ID<87f9a3d4-427e-472f-bee7-9501ba842b36@googlegroups.com>
In reply to#45465
On Friday, May 17, 2013 8:50:26 AM UTC+5:30, lokesh...@gmail.com wrote:
> I need to write numbers into a file upto 50mb and it should be fast
> 
> can any one help me how to do that?
> 
> i had written the following code..
> 
> -----------------------------------------------------------------------------------------------------------
> 
> def create_file_numbers_old(filename, size):
> 
> start = time.clock()
> 
> 
> 
> value = 0
> 
> with open(filename, "w") as f:
> 
> while f.tell()< size:
> 
> f.write("{0}\n".format(value))
> 
> value += 1
> 
> 
> 
> end = time.clock()
> 
> 
> 
> print "time taken to write a file of size", size, " is ", (end -start), "seconds \n"
> 
> ------------------------------------------------------------------------------------------------------------------
> 
> it takes about 20sec i need 5 to 10 times less than that.
size = 50mb

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#45474

FromDave Angel <davea@davea.name>
Date2013-05-17 07:58 -0400
Message-ID<mailman.1784.1368791935.3114.python-list@python.org>
In reply to#45467
On 05/17/2013 12:35 AM, lokeshkoppaka@gmail.com wrote:
> On Friday, May 17, 2013 8:50:26 AM UTC+5:30, lokesh...@gmail.com wrote:
>> I need to write numbers into a file upto 50mb and it should be fast
>>
>> can any one help me how to do that?
>>
>> i had written the following code..
>>
>>  <SNIP>
>> value = 0
>>
>> with open(filename, "w") as f:
>>
>> while f.tell()< size:
>>
>> f.write("{0}\n".format(value))
>>   <SNIP more double-spaced nonsense from googlegroups>
   If you must use googlegroups, at least read this
   http://wiki.python.org/moin/GoogleGroupsPython.
>>
>>
>> it takes about 20sec i need 5 to 10 times less than that.
> size = 50mb
>

Most of the time is spent figuring out whether the file has reached its 
limit size.  If you want Python to go fast, just specify the data.  On 
my Linux system, it takes 11 seconds to write the first 6338888 values, 
which is just under 50mb.  If I write the obvious loop, writing that 
many values takes .25 seconds.

-- 
DaveA

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#45475

FromCarlos Nepomuceno <carlosnepomuceno@outlook.com>
Date2013-05-17 18:20 +0300
Message-ID<mailman.1785.1368804103.3114.python-list@python.org>
In reply to#45467
I've got the following results on my desktop PC (Win7/Python2.7.5):

C:\src\Python>python -m timeit -cvn3 -r3 "execfile('fastwrite2.py')"
raw times: 123 126 125
3 loops, best of 3: 41 sec per loop

C:\src\Python>python -m timeit -cvn3 -r3 "execfile('fastwrite5.py')"
raw times: 34 34.3 34
3 loops, best of 3: 11.3 sec per loop

C:\src\Python>python -m timeit -cvn3 -r3 "execfile('fastwrite6.py')"
raw times: 0.4 0.447 0.391
3 loops, best of 3: 130 msec per loop


If you can just copy a preexisting file it will surely increase the speed to the levels you need, but doing the cStringIO operations can reduce the time in 72%.

Strangely I just realised that the time it takes to complete such scripts is the same no matter what hard drive I choose to run them. The results are the same for an SSD (main drive) and a HDD.

I think it's very strange to take 11.3s to write 50MB (4.4MB/s) sequentially on a SSD which is capable of 140MB/s.

Is that a Python problem? Why does it take the same time on the HDD?


### fastwrite2.py ###  <<< this is your code
size = 50*1024*1024
value = 0
filename = 'fastwrite2.dat'
with open(filename, "w") as f:
    while f.tell()< size:
        f.write("{0}\n".format(value))
        value += 1
    f.close()


### fastwrite5.py ###
import cStringIO
size = 50*1024*1024
value = 0
filename = 'fastwrite5.dat'
x = 0
b = cStringIO.StringIO()
while x < size:
    line = '{0}\n'.format(value)
    b.write(line)
    value += 1
    x += len(line)+1
f = open(filename, 'w')
f.write(b.getvalue())
f.close()
b.close()


### fastwrite6.py ###
import shutil
src = 'fastwrite.dat'
dst = 'fastwrite6.dat'
shutil.copyfile(src, dst)



----------------------------------------
> Date: Fri, 17 May 2013 07:58:43 -0400
> From: davea@davea.name
> To: python-list@python.org
> Subject: Re: How to write fast into a file in python?
>
> On 05/17/2013 12:35 AM, lokeshkoppaka@gmail.com wrote:
>> On Friday, May 17, 2013 8:50:26 AM UTC+5:30, lokesh...@gmail.com wrote:
>>> I need to write numbers into a file upto 50mb and it should be fast
>>>
>>> can any one help me how to do that?
>>>
>>> i had written the following code..
>>>
>>> <SNIP>
>>> value = 0
>>>
>>> with open(filename, "w") as f:
>>>
>>> while f.tell()< size:
>>>
>>> f.write("{0}\n".format(value))
>>> <SNIP more double-spaced nonsense from googlegroups>
> If you must use googlegroups, at least read this
> http://wiki.python.org/moin/GoogleGroupsPython.
>>>
>>>
>>> it takes about 20sec i need 5 to 10 times less than that.
>> size = 50mb
>>
>
> Most of the time is spent figuring out whether the file has reached its
> limit size. If you want Python to go fast, just specify the data. On
> my Linux system, it takes 11 seconds to write the first 6338888 values,
> which is just under 50mb. If I write the obvious loop, writing that
> many values takes .25 seconds.
>
> --
> DaveA
> --
> http://mail.python.org/mailman/listinfo/python-list 		 	   		  

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#45477

FromSteven D'Aprano <steve+comp.lang.python@pearwood.info>
Date2013-05-17 16:42 +0000
Message-ID<51965e0e$0$29997$c3e8da3$5496439d@news.astraweb.com>
In reply to#45475
On Fri, 17 May 2013 18:20:33 +0300, Carlos Nepomuceno wrote:

> I've got the following results on my desktop PC (Win7/Python2.7.5):
> 
> C:\src\Python>python -m timeit -cvn3 -r3 "execfile('fastwrite2.py')" raw
> times: 123 126 125
> 3 loops, best of 3: 41 sec per loop

Your times here are increased significantly by using execfile. Using 
execfile means that instead of compiling the code once, then executing 
many times, it gets compiled over and over and over and over again. In my 
experience, using exec, execfile or eval makes your code ten or twenty 
times slower:

[steve@ando ~]$ python -m timeit 'x = 100; y = x/3'
1000000 loops, best of 3: 0.175 usec per loop
[steve@ando ~]$ python -m timeit 'exec("x = 100; y = x/3")'
10000 loops, best of 3: 37.8 usec per loop


> Strangely I just realised that the time it takes to complete such
> scripts is the same no matter what hard drive I choose to run them. The
> results are the same for an SSD (main drive) and a HDD.

There's nothing strange here. The time you measure is dominated by three 
things, in reducing order of importance:

* the poor choice of execfile dominates the time taken; 

* followed by choice of algorithm;

* followed by the time it actually takes to write to the disk, which is 
probably insignificant compared to the other two, regardless of whether 
you are using a HDD or SSD.

Until you optimize the code, optimizing the media is a waste of time. 


> I think it's very strange to take 11.3s to write 50MB (4.4MB/s)
> sequentially on a SSD which is capable of 140MB/s.

It doesn't. It takes 11.3 seconds to open a file, read it into memory, 
parse it, compile it into byte-code, and only then execute it. My 
prediction is that the call to f.write() and f.close() probably take a 
fraction of a second, and nearly all of the rest of the time is taken by 
other calculations.



-- 
Steven

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#45479

FromCarlos Nepomuceno <carlosnepomuceno@outlook.com>
Date2013-05-17 20:25 +0300
Message-ID<mailman.1787.1368811606.3114.python-list@python.org>
In reply to#45477
Thank you Steve! You are totally right!

It takes about 0.2s for the f.write() to return. Certainly because it writes to the system file cache (~250MB/s).

Using a little bit different approach I've got:

C:\src\Python>python -m timeit -cvn3 -r3 -s"from fastwrite5r import run" "run()"
raw times: 24 25.1 24.4
3 loops, best of 3: 8 sec per loop
    

This time it took 8s to complete from previous 11.3s.

Does those 3.3s are the time to "open, read, parse, compile" steps you told me?

If so, the execute step is really taking 8s, right?

Why does it take so long to build the string to be written? Can it get faster?

Thanks in advance!



### fastwrite5r.py ###
def run():
    import cStringIO
    size = 50*1024*1024
    value = 0
    filename = 'fastwrite5.dat'
    x = 0
    b = cStringIO.StringIO()
    while x < size:
        line = '{0}\n'.format(value)
        b.write(line)
        value += 1
        x += len(line)+1
    f = open(filename, 'w')
    f.write(b.getvalue())
    f.close()
    b.close()

if __name__ == '__main__':
    run()





----------------------------------------
> From: steve+comp.lang.python@pearwood.info
> Subject: Re: How to write fast into a file in python?
> Date: Fri, 17 May 2013 16:42:55 +0000
> To: python-list@python.org
>
> On Fri, 17 May 2013 18:20:33 +0300, Carlos Nepomuceno wrote:
>
>> I've got the following results on my desktop PC (Win7/Python2.7.5):
>>
>> C:\src\Python>python -m timeit -cvn3 -r3 "execfile('fastwrite2.py')" raw
>> times: 123 126 125
>> 3 loops, best of 3: 41 sec per loop
>
> Your times here are increased significantly by using execfile. Using
> execfile means that instead of compiling the code once, then executing
> many times, it gets compiled over and over and over and over again. In my
> experience, using exec, execfile or eval makes your code ten or twenty
> times slower:
>
> [steve@ando ~]$ python -m timeit 'x = 100; y = x/3'
> 1000000 loops, best of 3: 0.175 usec per loop
> [steve@ando ~]$ python -m timeit 'exec("x = 100; y = x/3")'
> 10000 loops, best of 3: 37.8 usec per loop
>
>
>> Strangely I just realised that the time it takes to complete such
>> scripts is the same no matter what hard drive I choose to run them. The
>> results are the same for an SSD (main drive) and a HDD.
>
> There's nothing strange here. The time you measure is dominated by three
> things, in reducing order of importance:
>
> * the poor choice of execfile dominates the time taken;
>
> * followed by choice of algorithm;
>
> * followed by the time it actually takes to write to the disk, which is
> probably insignificant compared to the other two, regardless of whether
> you are using a HDD or SSD.
>
> Until you optimize the code, optimizing the media is a waste of time.
>
>
>> I think it's very strange to take 11.3s to write 50MB (4.4MB/s)
>> sequentially on a SSD which is capable of 140MB/s.
>
> It doesn't. It takes 11.3 seconds to open a file, read it into memory,
> parse it, compile it into byte-code, and only then execute it. My
> prediction is that the call to f.write() and f.close() probably take a
> fraction of a second, and nearly all of the rest of the time is taken by
> other calculations.
>
>
>
> --
> Steven
> --
> http://mail.python.org/mailman/listinfo/python-list 		 	   		  

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#45481

FromSteven D'Aprano <steve+comp.lang.python@pearwood.info>
Date2013-05-17 17:47 +0000
Message-ID<51966d15$0$29997$c3e8da3$5496439d@news.astraweb.com>
In reply to#45475
On Fri, 17 May 2013 18:20:33 +0300, Carlos Nepomuceno wrote:

> ### fastwrite5.py ###
> import cStringIO
> size = 50*1024*1024
> value = 0
> filename = 'fastwrite5.dat'
> x = 0
> b = cStringIO.StringIO()
> while x < size:
>     line = '{0}\n'.format(value)
>     b.write(line)
>     value += 1
>     x += len(line)+1

Oh, I forgot to mention: you have a bug in this function. You're already 
including the newline in the len(line), so there is no need to add one. 
The result is that you only generate 44MB instead of 50MB.

> f = open(filename, 'w')
> f.write(b.getvalue())
> f.close()
> b.close()

Here are the results of profiling the above on my computer. Including the 
overhead of the profiler, it takes just over 50 seconds to run your file
on my computer.

[steve@ando ~]$ python -m cProfile fastwrite5.py
         17846645 function calls in 53.575 seconds

   Ordered by: standard name

   ncalls  tottime  percall  cumtime  percall filename:lineno(function)
        1   30.561   30.561   53.575   53.575 fastwrite5.py:1(<module>)
        1    0.000    0.000    0.000    0.000 {cStringIO.StringIO}
  5948879    5.582    0.000    5.582    0.000 {len}
        1    0.004    0.004    0.004    0.004 {method 'close' of 'cStringIO.StringO' objects}
        1    0.000    0.000    0.000    0.000 {method 'close' of 'file' objects}
        1    0.000    0.000    0.000    0.000 {method 'disable' of '_lsprof.Profiler' objects}
  5948879    9.979    0.000    9.979    0.000 {method 'format' of 'str' objects}
        1    0.103    0.103    0.103    0.103 {method 'getvalue' of 'cStringIO.StringO' objects}
  5948879    7.135    0.000    7.135    0.000 {method 'write' of 'cStringIO.StringO' objects}
        1    0.211    0.211    0.211    0.211 {method 'write' of 'file' objects}
        1    0.000    0.000    0.000    0.000 {open}


As you can see, the time is dominated by repeatedly calling len(), 
str.format() and StringIO.write() methods. Actually writing the data to 
the file is quite a small percentage of the cumulative time.

So, here's another version, this time using a pre-calculated limit. I 
cheated and just copied the result from the fastwrite5 output :-)

# fasterwrite.py
filename = 'fasterwrite.dat'
with open(filename, 'w') as f:
    for i in xrange(5948879):  # Actually only 44MB, not 50MB.
        f.write('%d\n' % i)


And the profile results are about twice as fast as fastwrite5 above, with 
only 8 seconds in total writing to my HDD.

[steve@ando ~]$ python -m cProfile fasterwrite.py
         5948882 function calls in 28.840 seconds

   Ordered by: standard name

   ncalls  tottime  percall  cumtime  percall filename:lineno(function)
        1   20.592   20.592   28.840   28.840 fasterwrite.py:1(<module>)
        1    0.000    0.000    0.000    0.000 {method 'disable' of '_lsprof.Profiler' objects}
  5948879    8.229    0.000    8.229    0.000 {method 'write' of 'file' objects}
        1    0.019    0.019    0.019    0.019 {open}


Without the overhead of the profiler, it is a little faster:

[steve@ando ~]$ time python fasterwrite.py

real    0m16.187s
user    0m13.553s
sys     0m0.508s


Although it is still slower than the heavily optimized dd command, 
but not unreasonably slow for a high-level language:

[steve@ando ~]$ time dd if=fasterwrite.dat of=copy.dat
90781+1 records in
90781+1 records out
46479922 bytes (46 MB) copied, 0.737009 seconds, 63.1 MB/s

real    0m0.786s
user    0m0.071s
sys     0m0.595s




-- 
Steven

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#45482

FromCarlos Nepomuceno <carlosnepomuceno@outlook.com>
Date2013-05-17 21:18 +0300
Message-ID<mailman.1788.1368814763.3114.python-list@python.org>
In reply to#45481
You've hit the bullseye! ;)

Thanks a lot!!!

> Oh, I forgot to mention: you have a bug in this function. You're already
> including the newline in the len(line), so there is no need to add one.
> The result is that you only generate 44MB instead of 50MB.

That's because I'm running on Windows.
What's the fastest way to check if '\n' translates to 2 bytes on file?

> Here are the results of profiling the above on my computer. Including the
> overhead of the profiler, it takes just over 50 seconds to run your file
> on my computer.
>
> [steve@ando ~]$ python -m cProfile fastwrite5.py
> 17846645 function calls in 53.575 seconds
>

Didn't know the cProfile module.Thanks a lot!

> Ordered by: standard name
>
> ncalls tottime percall cumtime percall filename:lineno(function)
> 1 30.561 30.561 53.575 53.575 fastwrite5.py:1(<module>)
> 1 0.000 0.000 0.000 0.000 {cStringIO.StringIO}
> 5948879 5.582 0.000 5.582 0.000 {len}
> 1 0.004 0.004 0.004 0.004 {method 'close' of 'cStringIO.StringO' objects}
> 1 0.000 0.000 0.000 0.000 {method 'close' of 'file' objects}
> 1 0.000 0.000 0.000 0.000 {method 'disable' of '_lsprof.Profiler' objects}
> 5948879 9.979 0.000 9.979 0.000 {method 'format' of 'str' objects}
> 1 0.103 0.103 0.103 0.103 {method 'getvalue' of 'cStringIO.StringO' objects}
> 5948879 7.135 0.000 7.135 0.000 {method 'write' of 'cStringIO.StringO' objects}
> 1 0.211 0.211 0.211 0.211 {method 'write' of 'file' objects}
> 1 0.000 0.000 0.000 0.000 {open}
>
>
> As you can see, the time is dominated by repeatedly calling len(),
> str.format() and StringIO.write() methods. Actually writing the data to
> the file is quite a small percentage of the cumulative time.
>
> So, here's another version, this time using a pre-calculated limit. I
> cheated and just copied the result from the fastwrite5 output :-)
>
> # fasterwrite.py
> filename = 'fasterwrite.dat'
> with open(filename, 'w') as f:
> for i in xrange(5948879): # Actually only 44MB, not 50MB.
> f.write('%d\n' % i)
>

I had the same idea but kept the original method because I didn't want to waste time creating a function for calculating the actual number of iterations needed to deliver 50MB of data. ;)

> And the profile results are about twice as fast as fastwrite5 above, with
> only 8 seconds in total writing to my HDD.
>
> [steve@ando ~]$ python -m cProfile fasterwrite.py
> 5948882 function calls in 28.840 seconds
>
> Ordered by: standard name
>
> ncalls tottime percall cumtime percall filename:lineno(function)
> 1 20.592 20.592 28.840 28.840 fasterwrite.py:1(<module>)
> 1 0.000 0.000 0.000 0.000 {method 'disable' of '_lsprof.Profiler' objects}
> 5948879 8.229 0.000 8.229 0.000 {method 'write' of 'file' objects}
> 1 0.019 0.019 0.019 0.019 {open}
>

I thought there would be a call to format method by "'%d\n' % i". It seems the % operator is a lot faster than format.
I just stopped using it because I read it was going to be deprecated. :(
Why replace such a great and fast operator by a slow method? I mean, why format is been preferred over %?

> Without the overhead of the profiler, it is a little faster:
>
> [steve@ando ~]$ time python fasterwrite.py
>
> real 0m16.187s
> user 0m13.553s
> sys 0m0.508s
>
>
> Although it is still slower than the heavily optimized dd command,
> but not unreasonably slow for a high-level language:
>
> [steve@ando ~]$ time dd if=fasterwrite.dat of=copy.dat
> 90781+1 records in
> 90781+1 records out
> 46479922 bytes (46 MB) copied, 0.737009 seconds, 63.1 MB/s
>
> real 0m0.786s
> user 0m0.071s
> sys 0m0.595s
>
>
>
>
> --
> Steven
> --
> http://mail.python.org/mailman/listinfo/python-list 		 	   		  

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#45489

FromSteven D'Aprano <steve+comp.lang.python@pearwood.info>
Date2013-05-18 04:01 +0000
Message-ID<5196fd08$0$29997$c3e8da3$5496439d@news.astraweb.com>
In reply to#45482
On Fri, 17 May 2013 21:18:15 +0300, Carlos Nepomuceno wrote:

> I thought there would be a call to format method by "'%d\n' % i". It
> seems the % operator is a lot faster than format. I just stopped using
> it because I read it was going to be deprecated. :( Why replace such a
> great and fast operator by a slow method? I mean, why format is been
> preferred over %?

That is one of the most annoying, pernicious myths about Python, probably 
second only to "the GIL makes Python slow" (it actually makes it fast). 

String formatting with % is not deprecated. It will not be deprecated, at 
least not until Python 4000.

The string format() method has a few advantages: it is more powerful, 
consistent and flexible, but it is significantly slower.

Probably the biggest disadvantage to % formatting, and probably the main 
reason why it is "discouraged", is that it treats tuples specially. 
Consider if x is an arbitrary object, and you call "%s" % x:

py> "%s" % 23  # works
'23'
py> "%s" % [23, 42]  # works
'[23, 42]'

and so on for *almost* any object. But if x is a tuple, strange things 
happen:

py> "%s" % (23,)  # tuple with one item looks like an int
'23'
py> "%s" % (23, 42)  # tuple with two items fails
Traceback (most recent call last):
  File "<stdin>", line 1, in <module>
TypeError: not all arguments converted during string formatting


So when dealing with arbitrary objects that you cannot predict what they 
are, it is better to use format.



-- 
Steven

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#45496

FromChris Angelico <rosuav@gmail.com>
Date2013-05-18 15:28 +1000
Message-ID<mailman.1794.1368854897.3114.python-list@python.org>
In reply to#45489
On Sat, May 18, 2013 at 2:01 PM, Steven D'Aprano
<steve+comp.lang.python@pearwood.info> wrote:
> Consider if x is an arbitrary object, and you call "%s" % x:
>
> py> "%s" % 23  # works
> '23'
> py> "%s" % [23, 42]  # works
> '[23, 42]'
>
> and so on for *almost* any object. But if x is a tuple, strange things
> happen

Which can be guarded against by wrapping it up in a tuple. All you're
seeing is that the shortcut notation for a single parameter can't
handle tuples.

>>> def show(x):
	return "%s" % (x,)

>>> show(23)
'23'
>>> show((23,))
'(23,)'
>>> show([23,42])
'[23, 42]'

One of the biggest differences between %-formatting and str.format is
that one is an operator and the other a method. The operator is always
going to be faster, but the method can give more flexibility (not that
I've ever needed or wanted to override anything).

>>> def show_format(x):
	return "{}".format(x) # Same thing using str.format
>>> dis.dis(show)
  2           0 LOAD_CONST               1 ('%s')
              3 LOAD_FAST                0 (x)
              6 BUILD_TUPLE              1
              9 BINARY_MODULO
             10 RETURN_VALUE
>>> dis.dis(show_format)
  2           0 LOAD_CONST               1 ('{}')
              3 LOAD_ATTR                0 (format)
              6 LOAD_FAST                0 (x)
              9 CALL_FUNCTION            1 (1 positional, 0 keyword pair)
             12 RETURN_VALUE

Attribute lookup and function call versus binary operator. Potentially
a lot of flexibility, versus basically hard-coded functionality. But
has anyone ever actually made use of it?

str.format does have some cleaner features, like naming of parameters:

>>> "{foo} vs {bar}".format(foo=1,bar=2)
'1 vs 2'
>>> "%(foo)s vs %(bar)s"%{'foo':1,'bar':2}
'1 vs 2'

Extremely handy when you're working with hugely complex format
strings, and the syntax feels a bit clunky in % (also, it's not
portable to other languages, which is one of %-formatting's biggest
features). Not a huge deal, but if you're doing a lot with that, it
might be a deciding vote.

ChrisA

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#45502

From88888 Dihedral <dihedral88888@googlemail.com>
Date2013-05-18 04:09 -0700
Message-ID<b960d47a-de79-4bc8-b731-328a6405f9cb@googlegroups.com>
In reply to#45489
Steven D'Aprano於 2013年5月18日星期六UTC+8下午12時01分13秒寫道:
> On Fri, 17 May 2013 21:18:15 +0300, Carlos Nepomuceno wrote:
> 
> 
> 
> > I thought there would be a call to format method by "'%d\n' % i". It
> 
> > seems the % operator is a lot faster than format. I just stopped using
> 
> > it because I read it was going to be deprecated. :( Why replace such a
> 
> > great and fast operator by a slow method? I mean, why format is been
> 
> > preferred over %?
> 
> 
> 
> That is one of the most annoying, pernicious myths about Python, probably 
> 
> second only to "the GIL makes Python slow" (it actually makes it fast). 
> 
> 

The print function in python  is designed to print 
any printable object with a valid string representation.

The format part of the print function has to construct 
a printable string according to the format string 
and the variables passed in on the fly. 

If the acctual string to be printed in the format processing
is obtained in the high level OOP way , then it is definitely 
slow due to the high level overheads and generality requirements.




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#45483

FromCarlos Nepomuceno <carlosnepomuceno@outlook.com>
Date2013-05-17 21:33 +0300
Message-ID<mailman.1789.1368815671.3114.python-list@python.org>
In reply to#45481
Think the following update will make the code more portable:

x += len(line)+len(os.linesep)-1

Not sure if it's the fastest way to achieve that. :/

> On Fri, 17 May 2013 18:20:33 +0300, Carlos Nepomuceno wrote:
>
>> ### fastwrite5.py ###
>> import cStringIO
>> size = 50*1024*1024
>> value = 0
>> filename = 'fastwrite5.dat'
>> x = 0
>> b = cStringIO.StringIO()
>> while x < size:
>>     line = '{0}\n'.format(value)
>>     b.write(line)
>>     value += 1
>>     x += len(line)+1
>
> Oh, I forgot to mention: you have a bug in this function. You're already
> including the newline in the len(line), so there is no need to add one.
> The result is that you only generate 44MB instead of 50MB. 		 	   		  

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#45497

FromFábio Santos <fabiosantosart@gmail.com>
Date2013-05-18 08:49 +0100
Message-ID<mailman.1795.1368863405.3114.python-list@python.org>
In reply to#45481

[Multipart message — attachments visible in raw view] — view raw

On 17 May 2013 19:38, "Carlos Nepomuceno" <carlosnepomuceno@outlook.com>
wrote:
>
> Think the following update will make the code more portable:
>
> x += len(line)+len(os.linesep)-1
>
> Not sure if it's the fastest way to achieve that. :/
>

Putting len(os.linesep)'s value into a local variable will make accessing
it quite a bit faster. But why would you want to do that?

You mentioned "\n" translating to two lines, but this won't happen. Windows
will not mess with what you write to your file. It's just that
traditionally windows and windows programs use \r\n instead of just \n. I
think it was for compatibility with os/2 or macintosh (I don't remember
which), which used \r for newlines.

You don't have to follow this convention. If you open a \n-separated file
with *any* text editor other than notepad, your newlines will be okay.

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#45513

FromChris Angelico <rosuav@gmail.com>
Date2013-05-19 00:29 +1000
Message-ID<mailman.1805.1368887398.3114.python-list@python.org>
In reply to#45481
On Sat, May 18, 2013 at 5:49 PM, Fábio Santos <fabiosantosart@gmail.com> wrote:
> Putting len(os.linesep)'s value into a local variable will make accessing it
> quite a bit faster. But why would you want to do that?
>
> You mentioned "\n" translating to two lines, but this won't happen. Windows
> will not mess with what you write to your file. It's just that traditionally
> windows and windows programs use \r\n instead of just \n. I think it was for
> compatibility with os/2 or macintosh (I don't remember which), which used \r
> for newlines.
>
> You don't have to follow this convention. If you open a \n-separated file
> with *any* text editor other than notepad, your newlines will be okay.


Into two characters, not two lines, but yes. A file opened in text
mode on Windows will have its lines terminated with two characters.
(And it's old Macs that used to use \r. OS/2 follows the DOS
convention of \r\n, but again, many apps these days are happy with
Unix newlines there too.)

ChrisA

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#45517

FromCarlos Nepomuceno <carlosnepomuceno@outlook.com>
Date2013-05-18 20:00 +0300
Message-ID<mailman.1808.1368896475.3114.python-list@python.org>
In reply to#45481
Python really writes '\n\r' on Windows. Just check the files.

Internal representations only keep '\n' for simplicity, but if you wanna keep track of the file length you have to take that into account. ;)

________________________________
> Date: Sat, 18 May 2013 08:49:55 +0100 
> Subject: RE: How to write fast into a file in python? 
> From: fabiosantosart@gmail.com 
> To: carlosnepomuceno@outlook.com 
> CC: python-list@python.org 
>  
>  
> On 17 May 2013 19:38, "Carlos Nepomuceno"  
> <carlosnepomuceno@outlook.com<mailto:carlosnepomuceno@outlook.com>>  
> wrote: 
> > 
> > Think the following update will make the code more portable: 
> > 
> > x += len(line)+len(os.linesep)-1 
> > 
> > Not sure if it's the fastest way to achieve that. :/ 
> > 
>  
> Putting len(os.linesep)'s value into a local variable will make  
> accessing it quite a bit faster. But why would you want to do that? 
>  
> You mentioned "\n" translating to two lines, but this won't happen.  
> Windows will not mess with what you write to your file. It's just that  
> traditionally windows and windows programs use \r\n instead of just \n.  
> I think it was for compatibility with os/2 or macintosh (I don't  
> remember which), which used \r for newlines. 
>  
> You don't have to follow this convention. If you open a \n-separated  
> file with *any* text editor other than notepad, your newlines will be  
> okay. 		 	   		  

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#45579

FromTim Roberts <timr@probo.com>
Date2013-05-19 19:04 -0700
Message-ID<h21jp8tnkucskbpugr7bb41m41h902o8rq@4ax.com>
In reply to#45517
Carlos Nepomuceno <carlosnepomuceno@outlook.com> wrote:

>Python really writes '\n\r' on Windows. Just check the files.

It actually writes \r\n, but it's not Python that's doing it.  It's the C
runtime library.

And, of course, you can eliminate all of that by opening the file in binary
mode open(name,'wb').
-- 
Tim Roberts, timr@probo.com
Providenza & Boekelheide, Inc.

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#45523

FromDennis Lee Bieber <wlfraed@ix.netcom.com>
Date2013-05-18 15:14 -0400
Message-ID<mailman.1813.1368904489.3114.python-list@python.org>
In reply to#45481
tOn Sat, 18 May 2013 08:49:55 +0100, Fábio Santos
<fabiosantosart@gmail.com> declaimed the following in
gmane.comp.python.general:


> You mentioned "\n" translating to two lines, but this won't happen. Windows
> will not mess with what you write to your file. It's just that
> traditionally windows and windows programs use \r\n instead of just \n. I
> think it was for compatibility with os/2 or macintosh (I don't remember
> which), which used \r for newlines.
>
	Neither... It goes back to Teletype machines where one sent a
carriage return to move the printhead back to the left, then sent a line
feed to advance the paper (while the head was still moving left), and in
some cases also provided a rub-out character (a do-nothing) to add an
additional character time delay.

	TRS-80 Mod 1-4 used <cr> for "new line", I believe Apple used <lf>
for "new line"... And both lost the ability to move down the page
without also resetting the carriage to the left. In a world where both
<cr><lf> is used, one could draw a vertical line of | by just spacing
across the first line, printing |, then repeat <lf><bkspc>| until done.
To do the same with conventional <lf> is "new line/return" one has to
transmit all those spaces for each line...

	At 300baud, that took time....


-- 
	Wulfraed                 Dennis Lee Bieber         AF6VN
        wlfraed@ix.netcom.com    HTTP://wlfraed.home.netcom.com/

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#45526

FromRoy Smith <roy@panix.com>
Date2013-05-18 15:37 -0400
Message-ID<roy-4604ED.15370618052013@news.panix.com>
In reply to#45523
In article <mailman.1813.1368904489.3114.python-list@python.org>,
 Dennis Lee Bieber <wlfraed@ix.netcom.com> wrote:

> tOn Sat, 18 May 2013 08:49:55 +0100, Fábio Santos
> <fabiosantosart@gmail.com> declaimed the following in
> gmane.comp.python.general:
> 
> 
> > You mentioned "\n" translating to two lines, but this won't happen. Windows
> > will not mess with what you write to your file. It's just that
> > traditionally windows and windows programs use \r\n instead of just \n. I
> > think it was for compatibility with os/2 or macintosh (I don't remember
> > which), which used \r for newlines.
> >
> 	Neither... It goes back to Teletype machines where one sent a
> carriage return to move the printhead back to the left, then sent a line
> feed to advance the paper (while the head was still moving left), and in
> some cases also provided a rub-out character (a do-nothing) to add an
> additional character time delay.

The delay was important.  It took more than one character time for the 
print head to get back to the left margin.  If you kept sending 
printable characters while the print head was still flying back, they 
would get printed in the middle of the line (perhaps blurred a little).

There was also a dashpot which cushioned the head assembly when it 
reached the left margin.  Depending on how well adjusted things were 
this might take another character time or two to fully settle down.

You can still see the remnants of this in modern Unix systems:

$ stty -a
speed 9600 baud; rows 40; columns 136; line = 0;
intr = ^C; quit = ^\; erase = ^?; kill = ^U; eof = ^D; eol = M-^?; eol2 
= M-^?; swtch = <undef>; start = ^Q; stop = ^S; susp = ^Z;
rprnt = ^R; werase = ^W; lnext = ^V; flush = ^O; min = 1; time = 0;
-parenb -parodd cs8 -hupcl -cstopb cread -clocal -crtscts
-ignbrk -brkint -ignpar -parmrk -inpck -istrip -inlcr -igncr icrnl ixon 
-ixoff -iuclc ixany imaxbel -iutf8
opost -olcuc -ocrnl onlcr -onocr -onlret -ofill -ofdel nl0 cr0 tab0 bs0 
vt0 ff0
isig icanon iexten echo echoe -echok -echonl -noflsh -xcase -tostop 
-echoprt echoctl echoke

The "nl0" and "cr0" mean it's configured to insert 0 delay after 
newlines and carriage returns.  Whether setting a non-zero delay 
actually does anything useful anymore is an open question, but the 
drivers still accept the settings.

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#45534

FromSteven D'Aprano <steve+comp.lang.python@pearwood.info>
Date2013-05-18 22:23 +0000
Message-ID<5197ff62$0$29997$c3e8da3$5496439d@news.astraweb.com>
In reply to#45523
On Sat, 18 May 2013 15:14:31 -0400, Dennis Lee Bieber wrote:

> tOn Sat, 18 May 2013 08:49:55 +0100, Fábio Santos
> <fabiosantosart@gmail.com> declaimed the following in
> gmane.comp.python.general:
> 
> 
>> You mentioned "\n" translating to two lines, but this won't happen.
>> Windows will not mess with what you write to your file. 

Windows certainly may mess with what you write to your file, if it is 
opened in Text mode instead of Binary mode. In text mode, Windows will:

- interpret Ctrl-Z characters as End Of File when reading;

- convert \r\n to \n when reading;

- convert \n to \r\n when writing.

http://msdn.microsoft.com/en-us/library/z5hh6ee9(v=vs.80).aspx


>> It's just that
>> traditionally windows and windows programs use \r\n instead of just \n.
>> I think it was for compatibility with os/2 or macintosh (I don't
>> remember which), which used \r for newlines.
>>
> 	Neither... It goes back to Teletype machines where one sent a
> carriage return to move the printhead back to the left, then sent a line
> feed to advance the paper (while the head was still moving left), and in
> some cases also provided a rub-out character (a do-nothing) to add an
> additional character time delay.

Yes, if you go back far enough, you get to teletype machines. But Windows 
inherits its text-mode behaviour from DOS, which inherits it from CP/M. 


> 	TRS-80 Mod 1-4 used <cr> for "new line", I believe Apple used <lf>
> for "new line"... 

I can't comment about TRS, but classic Apple Macs (up to System 9) used 
carriage return \r as the line separator.



-- 
Steven

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