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| Date | Fri, 10 Jun 2011 16:23:19 -0400 |
| Subject | parallel computations: subprocess.Popen(...).communicate()[0] does not work with multiprocessing.Pool |
| From | Hseu-Ming Chen <hseuming@gmail.com> |
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Hi, I am having an issue when making a shell call from within a multiprocessing.Process(). Here is the story: i tried to parallelize the computations in 800-ish Matlab scripts and then save the results to MySQL. The non-parallel/serial version has been running fine for about 2 years. However, in the parallel version via multiprocessing that i'm working on, it appears that the Matlab scripts have never been kicked off and nothing happened with subprocess.Popen. The debug printing below does not show up either. Moreover, even if i replace the Matlab invocation with some trivial "sed" call, still nothing happens. Is it possible that the Python interpreter i'm using (version 2.6 released on Oct. 1, 2008) is too old? Nevertheless, i would like to make sure the basic framework i've now is not blatantly wrong. Below is a skeleton of my Python program: ---------------------------------------------- import subprocess from multiprocessing import Pool def worker(DBrow,config): # run one Matlab script cmd1 = "/usr/local/bin/matlab ... myMatlab.1.m" subprocess.Popen([cmd1], shell=True, stdout=subprocess.PIPE).communicate()[0] print "this does not get printed" cmd2 = "sed ..." print subprocess.Popen(cmd2, shell=True, stdout=subprocess.PIPE).communicate()[0] print "this does not get printed either" sys.stdout.flush() ### main program below ...... # kick off parallel processing pool = Pool() for DBrow in DBrows: pool.apply_async(worker,(DBrow,config)) pool.close() pool.join() ...... ---------------------------------------------- Furthermore, i also tried adding the following: multiprocessing.current_process().curr_proc.daemon = False at the beginning of the "worker" function above but to no avail. Any help would really be appreciated.
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parallel computations: subprocess.Popen(...).communicate()[0] does not work with multiprocessing.Pool Hseu-Ming Chen <hseuming@gmail.com> - 2011-06-10 16:23 -0400 Re: parallel computations: subprocess.Popen(...).communicate()[0] does not work with multiprocessing.Pool Chris Torek <nospam@torek.net> - 2011-06-12 22:00 +0000
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