Path: csiph.com!aioe.org!bofh.it!news.nic.it!robomod From: Piotr =?utf-8?Q?O=C5=BCarowski?= Newsgroups: linux.debian.maint.python Subject: Re: No clue yet for building snakemake since there are two dirs in .pybuild Date: Wed, 27 Jun 2018 14:40:01 +0200 Message-ID: References: X-Mailbox-Line: From debian-python-request@lists.debian.org Wed Jun 27 12:33:33 2018 Old-Return-Path: X-Amavis-Spam-Status: No, score=-6.65 tagged_above=-10000 required=5.3 tests=[BAYES_00=-2, FOURLA=0.1, HEADER_FROM_DIFFERENT_DOMAINS=0.25, LDO_WHITELIST=-5] autolearn=ham autolearn_force=no X-Policyd-Weight: using cached result; rate: -6.1 Mail-Followup-To: debian-python@lists.debian.org MIME-Version: 1.0 Content-Type: text/plain; charset=utf-8 Content-Disposition: inline Content-Transfer-Encoding: 8bit User-Agent: NeoMutt/20180223 X-Mailing-List: archive/latest/16069 List-ID: List-URL: List-Archive: https://lists.debian.org/msgid-search/20180627123312.dzad7rie6c7axhcu@sar0.p1otr.com Approved: robomod@news.nic.it Lines: 32 Organization: linux.* mail to news gateway Sender: robomod@news.nic.it X-Original-Date: Wed, 27 Jun 2018 14:33:12 +0200 X-Original-Message-ID: <20180627123312.dzad7rie6c7axhcu@sar0.p1otr.com> X-Original-References: <20180626095124.2asvsuaoq6bilru5@an3as.eu> <20180627090506.c5r44vza4twctzfo@sar0.p1otr.com> Xref: csiph.com linux.debian.maint.python:10660 [Piotr Ożarowski, 2018-06-27] > [Stuart Prescott, 2018-06-26] > > > # ls -l /build/snakemake-5.1.5/.pybuild > > > total 8 > > > drwxr-xr-x 3 pbuilder pbuilder 4096 Jun 26 09:20 cpython3_3.6 > > > drwxr-xr-x 3 pbuilder pbuilder 4096 Jun 26 09:20 cpython3_3.6_snakemake > > > > > > and the latter contains all the installed files while the former is > > > empty. How can I prevent this? > > > > Deleting PYBUILD_NAME from your debian/rules is sufficient to fix that. When > > set, that sets HOME to the above directory and the build system for some > > reason starts using that. > > > > And no, I can't explain why that is... > > "cpython3_3.6" is used if --name / PYBUILD_NAME is not defined. Name is > added to it to support building multiple modules/extensions at the same > time. If snakemake doesn't invoke pybuild twice (with and without > --name) then existence of cpython3_3.6 (without "_snakemake") is a bug > somewhere in pybuild FTR: not a bug in pybuild, in line 11 you have: export PATH:=$(shell pybuild --print build_dir --interpreter python3)/bin:$(PATH) and export/pybuild doesn't know about PYBUILD_NAME yet (it's how Makefile works), you need to add "--name $(PYBUILD_NAME)", like this: export PATH:=$(shell pybuild --print build_dir --interpreter python3 --name $(PYBUILD_NAME))/bin:$(PATH) -- GPG: 1D2F A898 58DA AF62 1786 2DF7 AEF6 F1A2 A745 7645