Path: csiph.com!news.freedyn.net!open-news-network.org!newsfeed.datemas.de!weretis.net!feeder4.news.weretis.net!news.mixmin.net!aioe.org!bofh.it!news.nic.it!robomod From: Olivier Sallou Newsgroups: linux.debian.maint.python Subject: Re: Strange encoding problem in setup.py of biopython 1.71 Date: Thu, 05 Apr 2018 16:50:02 +0200 Message-ID: References: X-Mailbox-Line: From debian-python-request@lists.debian.org Thu Apr 5 14:47:26 2018 Old-Return-Path: X-Amavis-Spam-Status: No, score=-9.88 tagged_above=-10000 required=5.3 tests=[BAYES_00=-2, FOURLA=0.1, LDO_WHITELIST=-5, MEDS2=2, MURPHY_DRUGS_REL8=0.02, RCVD_IN_DNSWL_HI=-5] autolearn=ham autolearn_force=no X-Policyd-Weight: using cached result; rate: -7 X-Greylist: delayed 617 seconds by postgrey-1.36 at bendel; Thu, 05 Apr 2018 14:47:10 UTC X-Ironport-Av: E=Sophos;i="5.48,411,1517871600"; d="scan'208";a="261010816" Openpgp: preference=signencrypt Autocrypt: addr=olivier.sallou@irisa.fr; prefer-encrypt=mutual; keydata= xsFNBE0+w54BEACgsas38C2hNdCjGifRs8pONmqqvZlEKVcNMelF/dyMB0rW1S54XOoovjL6 PebGvxxwHd5YW29D9YNChMumyUWFrEA4RxkSoAvU0Ew3GEc47xbqkP08GxVmQ+Czg+FTBAcR mc32R/Cn4jDeCkMHjkWd7wm1anUOV0pq3zzd0yWscaK4eeRopt21tfjfN3ZuKfZq3JFXQy/D qUaPeFCWTgBSzmMAij0XlMyM+2/NOZJEY4PEEh7ED3dpvW+iph3dV3r5VfuhYIctNAeHg2Af B3plqq62do6qomCYLvx2b4RBnzTjmmMv2ksJcCDznaGgHhnkbf6/GZLiAMUnmfCv8vtxRBsI oFqmyQ6mXfHzkz16P/My/hfLCOS/lqYo234T6n2pHODBuRv4HT1cxmmwtcJWmC/fI0gS/JZs iZcMdtdcT0lG2E11pGSeyzf1NhrQO94f/pd/oncBcYPFiiTVUjrEM1F+/ZtkXhPpiEKHjuBe nW/MyG5W0W7Ltj7yXoeVcrDFQ3EWWm1nErQZFT/yhKP/OKt3mYvCgyDeMQXU0g0+I1N1nFdl SprKAjunqOqXNlJ0x7VOyOanEOHEsHwwqgMYGGsvwgzF5ZGEexG+p2lT6PiySBr7ZM743A94 xCpYb7bWOixR4I6Kgg61dJWMg3h22TLx9JS8S0zSQoHpRR6bawARAQABzSNPbGl2aWVyIFNh bGxvdSA8b3NhbGxvdUBkZWJpYW4ub3JnPsLBgAQTAQgAKgIbAwULCQgHAwUVCgkICwUWAgMB AAIeAQIXgAIZAQUCVzWB3QUJDbklMQAKCRB43GjbMm2EOHVdD/9h48YYEDeDTCS4KaaD3+n+ oNQ1EUnr8pEMvehrhB8S35QgTxIulbQtvTVW+EbWJmFmEN1oCn4rfWZW4yDOMq1SNRQoku1U QttnKhGZ9Y8KzdVL4LpkhHMwZvI7Y9/y7czxMQIQ71cgtuGhzc4r69Mld8M1hU5ZACUDqd4y +IbqPK9I454YetALNj/Zxz0+L4QL3Z4KHwgjW6P7KUDASk5q+o70ZjL5Ufkv497ShHMRD27T TAT4WDYgPFEzWbDZigf8nQJRZ7o4BG6nCogf7LoEx/vOCaAqdUiFohi4xO5qQtshZSyQpLU4 g8BJtfSJpnxPWAk+fzuRbQWhX+PcIqqpda8tpuoDB1FstZ5kzdINnWsNPmECwE353zCqUmJx IvL6pfWs4I7efMfNuX8GQGSFDw45EUTOmVIJjxzZbGMvnHGcA9EhkfMoHnBmOMYOlfDyQlQY KMBH5Psp+0NEByaz5GPtvg5xH/zFFuxrVAdlIGwJWtxV8W1Y9n4R5NJ+PsokdkR0SluJ7T3S K9ukZw+/1TLU/gILQfUESS2ErkUasZlWJx/qWu6xL9rkty2/Z+G/JuFDPUbpsfAzJ4g4JzvM uSnx5qpy/T4IJI2hzmdFT7wOSNYCCr9O6BNY+kQdw4iy0Na/960Sw3JQQjT2VczU687MgcYy xN15O6c2qyzmmM7BTQRNtoM3ARAAthjwd8pbE9rgsTb/JM1HogKyxnw33nJtfouvg37/x2r9 lwRNB9UDzrSoSDOH7g1/aA9rtg2a6bZap2RAGWznIm/K8h8pjthiWa7cckmtJKfqCMwtDKy2 sxilqnZhFc5ljItXB1GVXjKgzixs/2ZTpGPVzpyr/DUQ47qP5GKdDxHVizL7SkOrZ0tl9iG6 h+2GZ00XfNTt8dDpHwpDwA0NPMV01OHoOHaT5gZXQUY9SSVYxQGkpMbeQ4e3VKT4vLV1XemR 4n3mFk9jzT7oK6ZL/j1qd/sGTadYBCDld2Jkkh2iyDQq59XdiuCfVTLeqsvnSjkQedlN7WrW cGuE/8DDvSI3bzguUkewMmXAp+xZpDIk5jbFHdMdhIAF9bbffkTlKaUO4a/PPdjULkWU7XDF PUgZo6C62abzemnST00bGmsxKuloJuaab6GcsvRBy0UqASImOvdg5XHRxHr+7TKGjU/PiSqC a7xZQOBynJpL9zNcKng3yOnV7hBuEBHFtsHBUlQYVzgV/8KuptJDB1BVmB6hWbajWv5OpOov Gqxz4MmvlxFjBlRZREdDZrqbF1t3hSUbNjElyVR/CmG4PB2tRAbUXX2qnjSpmSFkxxueP8nf 7H8Art0GiqxHha9lCUdrWTJ27JzDfG+tLgRMhBl89VlCpSz96r0qYiLUDr0xCiEAEQEAAcLB XwQYAQgACQUCTbaDNwIbDAAKCRB43GjbMm2EOCrZEACMrlizvHDKbaUngUIeMp/Uf6V+dCdr DtFe+jy1R5E1BifnNWwvKkdQpcFPkw/6rVe93QNrqar/ShqdtxSLf1noeIwcwxZw8u2FRg+A kAo0oovqXTfAW/5gQWcns/o+ObEbwUqhB0dKR8dAVYvePvv+OgXFndKyVi9s0FtX0Nagp/+B Ya6kyqi7erV0mqZNumGWF1wIMt36FAYAZwwOCKvXmh99xU18wuGukVkM6NV1HP4rASEwhtnR klU6A3Pc+6RtO+7fK2tptxEXohJFFB+MwKgGEviOJsZS/yB9r+47ZUAaVwGy+UiF93JSgS8N hjtHXrwK6jGXX4krEwuP0ItvV9mqHUrbSpG2TjWZ9YOoZPt5vAq7WkJnFKh8gKCVfjYgXaOs ByOFGzcc4VwION3juSmfN31C1IBUCFAxIHzr36C7KFIBSy0BO5eRQcGkthZB+Fe3u8x/ywVR ccXhb5pjLO67rz/JDgv8HXii18aq1AaVXFima64LpjI2mXTv29k1DVl+pMycEFdmoaH/FJvk zIJ3L4DUtJtyEtCIs4x0MGJfRoHYwxU6iGNN5lvWL1LE9ZotsuXesXF4rhRxrgs0qqx8Cqbe WRGDby0gS7RqqUvItjvT+1ehi2LiW/OJZrF61EVAfB5qXXIM9zy26FDmXJcHiyfKt0MK/NhI 9Z7rfw== User-Agent: Mozilla/5.0 (X11; Linux x86_64; rv:52.0) Gecko/20100101 Thunderbird/52.7.0 MIME-Version: 1.0 Content-Type: text/plain; charset=utf-8 Content-Transfer-Encoding: 8bit Content-Language: en-CA X-Mailing-List: archive/latest/15787 List-ID: List-URL: List-Archive: https://lists.debian.org/msgid-search/d4eca9c4-40f4-931c-bb33-fb1373be7231@irisa.fr Approved: robomod@news.nic.it Lines: 48 Organization: linux.* mail to news gateway Sender: robomod@news.nic.it X-Original-Date: Thu, 5 Apr 2018 16:37:00 +0200 X-Original-Message-ID: X-Original-References: <20180405141056.nsmfcwdingnmgx5d@an3as.eu> <20180405143432.xrnte6hyft7rf2vm@an3as.eu> Xref: csiph.com linux.debian.maint.python:10386 On 04/05/2018 04:34 PM, Andreas Tille wrote: > Hi Olivier, > > On Thu, Apr 05, 2018 at 04:19:37PM +0200, Olivier Sallou wrote: >> On 04/05/2018 04:10 PM, Andreas Tille wrote: >>> (maybe?) setup.py: >>> >>> >>> ... >>> dh_auto_clean >>> pybuild --clean -i python{version} -p 2.7 >>> I: pybuild base:217: python2.7 setup.py clean >>> running clean >>> removing '/home/andreas/debian-maintain/salsa/med-team/build-area/python-biopython-1.71+dfsg/.pybuild/cpython2_2.7/build' (and everything under it) >>> 'build/bdist.linux-x86_64' does not exist -- can't clean it >>> 'build/scripts-2.7' does not exist -- can't clean it >>> pybuild --clean -i python{version} -p 3.6 >>> I: pybuild base:217: python3.6 setup.py clean >>> Traceback (most recent call last): >>> File "setup.py", line 435, in >>> readme_rst = handle.read() >>> File "/usr/lib/python3.6/encodings/ascii.py", line 26, in decode >>> return codecs.ascii_decode(input, self.errors)[0] >>> UnicodeDecodeError: 'ascii' codec can't decode byte 0xe2 in position 7116: ordinal not in range(128) >>> E: pybuild pybuild:336: clean: plugin distutils failed with: exit code=1: python3.6 setup.py clean >>> dh_auto_clean: pybuild --clean -i python{version} -p 3.6 returned exit code 13 >> this is usually related to non ascii characters in file (readme.rst?) , >> if you find some, you can patch file to remove them. > Is there any efficient method to seek for this kind of non-ascii > characters? I found none  :-(  but looking at file content > > Kind regards > > Andreas. > -- Olivier Sallou Univ Rennes, Inria, CNRS, IRISA Irisa, Campus de Beaulieu F-35042 RENNES - FRANCE Tel: 02.99.84.71.95 gpg key id: 4096R/326D8438 (keyring.debian.org) Key fingerprint = 5FB4 6F83 D3B9 5204 6335 D26D 78DC 68DB 326D 8438