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From: Andreas Tille <andreas@an3as.eu>
Newsgroups: linux.debian.maint.python
Subject: Remaining numpy 1.24 issues on 32bit architectures
Date: Sun, 29 Jan 2023 12:20:01 +0100
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Xref: csiph.com linux.debian.maint.python:14868

Hi,

I think there are some remaining issues with numpy 1.24 migration on 32
bit architectures[1].

Here is one example:

_________ TestSequence.test_getitem_with_slice_has_positional_metadata _________

self = <skbio.sequence.tests.test_sequence.TestSequence testMethod=test_getitem_with_slice_has_positional_metadata>

    def test_getitem_with_slice_has_positional_metadata(self):
        s = "0123456789abcdef"
        length = len(s)
        seq = Sequence(s, metadata={'id': 'id3', 'description': 'dsc3'},
                       positional_metadata={'quality': np.arange(length)})
    
        eseq = Sequence("012", metadata={'id': 'id3', 'description': 'dsc3'},
                        positional_metadata={'quality': np.arange(3)})
        self.assertEqual(seq[0:3], eseq)
        self.assertEqual(seq[:3], eseq)
        self.assertEqual(seq[:3:1], eseq)
    
        eseq = Sequence("def", metadata={'id': 'id3', 'description': 'dsc3'},
                        positional_metadata={'quality': [13, 14, 15]})
>       self.assertEqual(seq[-3:], eseq)
E       AssertionError: Seque[128 chars]: int32>
E       Stats:
E           length: 3
E       ----------------[14 chars]0 def != Seque[128 chars]: int64>
E       Stats:
E           length: 3
E       ----------------[14 chars]0 def

skbio/sequence/tests/test_sequence.py:748: AssertionError

How can I ensure that in both cases the arrays have the same type (I think it makes
no difference whether it is np.int32 or np.int64 as long as they are of same type.

Kind regards

     Andreas.

[1] https://buildd.debian.org/status/package.php?p=python-skbio&suite=experimental

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