Path: csiph.com!newsfeed.xs4all.nl!newsfeed8.news.xs4all.nl!3.eu.feeder.erje.net!feeder.erje.net!weretis.net!feeder8.news.weretis.net!news.mixmin.net!aioe.org!bofh.it!news.nic.it!robomod From: patrice.duroux@gmail.com Newsgroups: linux.debian.maint.python Subject: Re: trouble with snakemake having glpk-utils installed Date: Tue, 23 Mar 2021 14:10:01 +0100 Message-ID: References: X-Mailbox-Line: From debian-python-request@lists.debian.org Tue Mar 23 13:06:10 2021 Old-Return-Path: X-Amavis-Spam-Status: No, score=-1.562 tagged_above=-10000 required=5.3 tests=[BAYES_00=-2, DKIM_SIGNED=0.1, DKIM_VALID=-0.1, DKIM_VALID_AU=-0.1, DKIM_VALID_EF=-0.1, FREEMAIL_FROM=0.001, RCVD_IN_DNSWL_NONE=-0.0001, SARE_MSGID_LONG40=0.637] autolearn=no autolearn_force=no X-Policyd-Weight: using cached result; rate: -5.5 Dkim-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=gmail.com; s=20161025; h=message-id:subject:from:to:date:in-reply-to:user-agent:mime-version :content-transfer-encoding; bh=8lyUzl+x6tyGpicYhgQLj/gZKzwRmpVs/QMX1075vag=; b=iAKAZBtl+/NoL22S/oeGOScJcUX2S783ZACbpsBkKX6dV1zKT738T1VQvzG6hzTHI8 fI9NSj0QjZTrcuISVLm1cFFxhXAlweMcTCYHRE0DDmpKHLGjxntW3Jo6Be92Cw1FxQgg 5NHJIf8C3/1eu3wWaiZUIGNxZj3IdYu7UOpyKalAAc/7vOgCBFRd4FZ07exUHESB9WwJ 1PJ0zSX0qnlTynCW8TulFAnAP1lj07Ie08QVFA2seuVlcb8nH2aZcfCyfUBUDnPEXH8k ifnH0jTlyC617vjul4X9A/GbyIOWFqePZa9mL8FbxV60bg8eFUAgMyEFttMRnXnms1Ep FwKw== X-Google-Dkim-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=1e100.net; s=20161025; h=x-gm-message-state:message-id:subject:from:to:date:in-reply-to :user-agent:mime-version:content-transfer-encoding; bh=8lyUzl+x6tyGpicYhgQLj/gZKzwRmpVs/QMX1075vag=; b=pU40P9hFXpWgYM1oSDtQMXZUEY8UhbnZhvJlw8ZzuRrmXN4u7FmSS57lxk74Eg7oBg 3vPIP11w695hCoCiY7rpRDDZZA8oENcSF5D0suuzwSDoi8RuhjD1VVD2+ofWanNcyNcP JOzfb2vgzTF5HHOFuXglyZcwAwl17jKD9TgySWR2VXChLsuEZLTxQ3HNTE23jASbdciU kx31hPVgwaRdXoMx17gXOy4VBx8qmlGfepPQ9RB//9tUhT8dQYqqQ2TeOgCEqJw+NJGa loOfTil7dxKvnzLhMBPmLd3A5jyxjf0SBYONJnlmAek5kYh9RyqyHfObytwZ7jP4N/6z DcfA== X-Gm-Message-State: AOAM531KxKrRTxeoXakzbz8AMBAULjwHTXfYHHknDO3RYjE20zetlhUs +k2Ahnk/8Rga45zYuMwWRFX8ggfez6wVtQ== X-Google-SMTP-Source: ABdhPJxxzLpu1//oSGzgDOP8rNJzNf8OuxVs8gdbzauVkpHBDh/fhk7xPQY3DUi9+HSScNjM2qswNw== X-Received: by 2002:a05:6000:c7:: with SMTP id q7mr3868674wrx.356.1616503683332; Tue, 23 Mar 2021 05:48:03 -0700 (PDT) Content-Type: text/plain; charset="UTF-8" User-Agent: Evolution 3.39.3-1 MIME-Version: 1.0 Content-Transfer-Encoding: 8bit X-Mailing-List: archive/latest/19077 List-ID: List-URL: List-Archive: https://lists.debian.org/msgid-search/37c17265990faee3a231b64acc6704ffac762755.camel@gmail.com Approved: robomod@news.nic.it Lines: 32 Organization: linux.* mail to news gateway Sender: robomod@news.nic.it X-Original-Date: Tue, 23 Mar 2021 13:48:01 +0100 X-Original-Message-ID: <37c17265990faee3a231b64acc6704ffac762755.camel@gmail.com> X-Original-References: Xref: csiph.com linux.debian.maint.python:13290 Hi, I found that it is python3-pulp that calls glpsol provided by glpk- utils: https://sources.debian.org/src/python-pulp/1.6.0+dfsg1-5/src/pulp/solvers.py/?hl=100#L100 It's strange that the python3-pulp package didn't at least suggest some of these tools because tracking my issue using apt rdepends didn't help that much. $ apt show python3-pulp Package: python3-pulp Version: 1.6.0+dfsg1-5 Priority: optional Section: python Source: python-pulp Maintainer: Debian OpenStack Installed-Size: 301 kB Depends: coinor-cbc, python3-pyparsing, python3:any Homepage: https://github.com/coin-or/pulp Tag: implemented-in::python $ apt rdepends glpk-utils glpk-utils Reverse Depends: Dépend: sagemath Should this be an issue on python3-pulp? Thanks, Patrice