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From: vjp2.at@at.BioStrategist.dot.dot.com
Newsgroups: comp.lang.java.programmer
Subject: Re: Java Jython RDKit, some progress, still confused
Date: Wed, 8 Jul 2020 13:40:29 +0000 (UTC)
Organization: Samani Marions Panyaught NYC-11357-3436-287-USA
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YOu are not going to believe this (I don't) but this runs:

the -jar wasn't part of their instructions but they had : jython after the
jython jar, which I removed.

Now, I ran the initial statements and I got no complaints, but I also don't
have any clue if it actually works

from org.RDKit import *
from java import lang
lang.System.loadLibrary('GraphMolWrap')
m = RWMol.MolFromSmiles('c1ccccc1')
m.getNumAtoms()

Each line just returns the jython >>> prompt. But I'm relieved.
For now.
Many thanks to all.


@echo off
SET RD_HOME=.
SET JAVA_HOME=..\CommonFiles\JAVA
SET JAVA_COMMAND=%JAVA_HOME%\bin\java.exe
SET LOCAL_CLASSPATH=%RD_HOME%\rdkit-masterCode\JavaWrappers\gmwrapper\org.RDKit.jar

"%JAVA_COMMAND%" -Xmx256m -classpath "%LOCAL_CLASSPATH%" -jar "%JAVA_HOME%"\bin\jython-standalone-2.5.jar  -Djava.library.path="%RD_HOME%"\rdkit-masterCode\JavaWrappers\gmwrapper


:END




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