Path: csiph.com!aioe.org!bofh.it!news.nic.it!robomod From: Andreas Tille Newsgroups: linux.debian.maint.python Subject: Trying to run build time tests using nosetest for python-pysam Date: Wed, 15 Jul 2015 14:30:02 +0200 Message-ID: References: X-Original-To: debian-med@lists.debian.org, debian-python@lists.debian.org Old-Return-Path: X-Amavis-Spam-Status: No, score=-5.599 tagged_above=-10000 required=5.3 tests=[BAYES_00=-2, LDO_WHITELIST=-5, MEDS2=2, RP_MATCHES_RCVD=-0.599] autolearn=no X-Policyd-Weight: using cached result; rate: -6.1 MIME-Version: 1.0 Content-Type: text/plain; charset=utf-8 Content-Disposition: inline Content-Transfer-Encoding: 8bit User-Agent: Mutt/1.5.23 (2014-03-12) X-Mailing-List: archive/latest/12406 List-ID: List-URL: Approved: robomod@news.nic.it Lines: 46 Organization: linux.* mail to news gateway Sender: robomod@news.nic.it X-Original-Date: Wed, 15 Jul 2015 14:21:48 +0200 X-Original-Message-ID: <20150715122148.GC17501@an3as.eu> X-Original-References: <20150710152238.GA11016@an3as.eu> Xref: aioe.org linux.debian.maint.python:7105 Hi, I tried to add build-time tests for python-pysam[1]. I admit I'm a bit confused about the fact that this involves compiler calls like: ... warning: no files found matching 'tests/tabix_data' writing manifest file 'pysam.egg-info/SOURCES.txt' skipping 'pysam/csamtools.c' Cython extension (up-to-date) building 'pysam.csamtools' extension x86_64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 - fPIC -D_FILE_OFFSET_BITS=64 -D_USE_KNETFILE= -Isamtools -Ipysam -I/usr/include -I/usr/include/python2.7 -c pysam/csamtools.c -o build/temp.linux-x86_64-2.7/pysam/csamtools.o -Wno- error=declaration-after-statement -DSAMTOOLS=1 ... and that it finally ends with ... In file included from pysam/cfaidx.c:261:0: pysam/htslib_util.h:12:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes] int hts_get_verbosity(); ^ x86_64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -D_FORTIFY_SOURCE=2 -g -fstack- protector-strong -Wformat -Werror=format-security -Wl,-z,relro -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-2.7/pysam/cfaidx.o -Lpysam -lz -lhts -o build/lib.linux-x86_64-2.7/pysam/cfaidx.so ---------------------------------------------------------------------- Ran 0 tests in 0.010s OK (same result with python3). I wonder what I'm missing here and how the build time test could be properly runned. Kind regards Andreas. [1] git://anonscm.debian.org/debian-med/python-pysam.git -- http://fam-tille.de -- To UNSUBSCRIBE, email to debian-python-REQUEST@lists.debian.org with a subject of "unsubscribe". Trouble? Contact listmaster@lists.debian.org Archive: https://lists.debian.org/20150715122148.GC17501@an3as.eu