Path: csiph.com!eternal-september.org!feeder.eternal-september.org!aioe.org!bofh.it!news.nic.it!robomod From: Andreas Tille Newsgroups: linux.debian.maint.java Subject: Java-help for BBMap needed Date: Sat, 19 Mar 2016 10:30:01 +0100 Message-ID: X-Original-To: Debian Med Packaging Team X-Mailbox-Line: From debian-java-request@lists.debian.org Sat Mar 19 09:24:51 2016 Old-Return-Path: X-Amavis-Spam-Status: No, score=-1.901 tagged_above=-10000 required=5.3 tests=[BAYES_00=-2, COMPANYSYMBOLPRICE=3, FOURLA=0.1, LDO_WHITELIST=-5, MEDS2=2, RP_MATCHES_RCVD=-0.001] autolearn=no autolearn_force=no X-Policyd-Weight: using cached result; rate:hard: -6.1 X-Greylist: delayed 2580 seconds by postgrey-1.35 at bendel; Sat, 19 Mar 2016 09:24:38 UTC MIME-Version: 1.0 Content-Type: text/plain; charset=us-ascii Content-Disposition: inline User-Agent: Mutt/1.5.23 (2014-03-12) X-Mailing-List: archive/latest/19269 List-ID: List-URL: List-Archive: https://lists.debian.org/msgid-search/20160319084135.GI27272@an3as.eu Approved: robomod@news.nic.it Lines: 39 Organization: linux.* mail to news gateway Sender: robomod@news.nic.it X-Original-Cc: Debian Java List X-Original-Date: Sat, 19 Mar 2016 09:41:35 +0100 X-Original-Message-ID: <20160319084135.GI27272@an3as.eu> Xref: csiph.com linux.debian.maint.java:8943 Hi, I just injected some rudimentary packaging for BBMap[1] which is a Java project but has no dedicated Build-System - it does not even create a JAR. My very naive approach to create a JAR ended up in ... jar -cmf debian/manifest bbmap.jar `find current -name "*.class"` current/stream/mpi/MPIWrapper.java:48: error: cannot find symbol Shared.MPI_RANK=MPI.COMM_WORLD.getRank(); ^ symbol: method getRank() location: variable COMM_WORLD of type Intracomm current/stream/mpi/MPIWrapper.java:49: error: cannot find symbol Shared.MPI_NUM_RANKS=MPI.COMM_WORLD.getSize(); ^ symbol: method getSize() location: variable COMM_WORLD of type Intracomm current/stream/mpi/MPIWrapper.java:82: error: cannot find symbol MPI.COMM_WORLD.bcast(bLength,1,MPI.INT,0); // can't probe a broadcast, so send message size first ^ symbol: method bcast(int[],int,Datatype,int) location: variable COMM_WORLD of type Intracomm current/stream/mpi/MPIWrapper.java:83: error: cannot find symbol MPI.COMM_WORLD.bcast(b,b.length,MPI.BYTE,0); // broadcast the actual message ^ symbol: method bcast(byte[],int,Datatype,int) location: variable COMM_WORLD of type Intracomm Any idea how to fix this? Kind regards Andreas. [1] https://anonscm.debian.org/git/debian-med/bbmap.git -- http://fam-tille.de